Wall clock time and date at job start Sun Mar 29 2020 21:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33641 * 126.03730 * 2 1 4 4 N 1.31778 * 114.50181 * 179.97438 * 3 2 1 5 5 C 1.29029 * 117.12461 * 0.02562 * 4 3 2 6 6 C 1.50700 * 124.91704 * 180.02562 * 5 4 3 7 7 N 1.46890 * 109.47141 * 90.02448 * 6 5 4 8 8 C 1.46904 * 111.00027 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.47142 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00493 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99917 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00192 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99938 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47197 * 89.99988 * 13 11 9 15 15 H 1.48505 * 109.47200 * 209.99852 * 13 11 9 16 16 H 1.48499 * 109.47308 * 329.99656 * 13 11 9 17 17 S 1.70982 * 110.16446 * 359.72487 * 5 4 3 18 18 H 1.09002 * 109.47152 * 90.00002 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00102 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00083 * 1 2 3 21 21 H 1.07996 * 122.75014 * 0.02562 * 3 2 1 22 22 H 1.09005 * 109.46889 * 210.02392 * 6 5 4 23 23 H 1.08999 * 109.47005 * 330.01998 * 6 5 4 24 24 H 1.00902 * 111.00266 * 303.95446 * 7 6 5 25 25 H 1.09001 * 109.46935 * 299.99662 * 8 7 6 26 26 H 1.08997 * 109.47014 * 59.99893 * 8 7 6 27 27 H 0.96998 * 120.00139 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9312 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0016 7 7 5.8139 -1.0875 1.3868 8 6 7.1998 -1.5730 1.4271 9 6 7.6366 -1.7270 2.8611 10 1 6.9533 -1.4879 3.6625 11 6 8.9091 -2.1724 3.1501 12 7 9.7414 -2.4633 2.1743 13 14 9.4503 -2.3641 4.9277 14 1 9.1316 -3.7365 5.3969 15 1 10.9141 -2.1345 5.0269 16 1 8.7356 -1.3736 5.7723 17 16 2.5436 -1.4247 0.0074 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 1.9025 2.0875 0.0004 22 1 5.4020 -1.8842 -0.5129 23 1 5.9911 -0.2046 -0.5112 24 1 5.7176 -0.2262 1.9037 25 1 7.2618 -2.5371 0.9225 26 1 7.8502 -0.8572 0.9244 27 1 10.6365 -2.7769 2.3776 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394721584.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:46 Heat of formation + Delta-G solvation = 34.516264 kcal Electronic energy + Delta-G solvation = -11289.977904 eV Core-core repulsion = 9174.248398 eV Total energy + Delta-G solvation = -2115.729506 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.50528 -35.50886 -32.94468 -32.06929 -28.83765 -26.25747 -24.64108 -22.89659 -21.45818 -19.07538 -17.94083 -16.43480 -15.17248 -14.87885 -14.62462 -14.28746 -13.73635 -13.49008 -13.04893 -12.60967 -12.55384 -12.13091 -11.47249 -11.28372 -11.04478 -10.75994 -10.70160 -10.01722 -9.44377 -9.21997 -9.04415 -8.62055 -8.49189 -7.42580 -6.05104 -4.07159 0.86380 1.51920 1.97499 2.99558 3.32410 3.37958 3.42303 4.35864 4.45114 4.93272 5.09454 5.28095 5.31031 5.35818 5.43701 5.66825 5.76296 5.93611 6.03879 6.35432 7.13993 7.35696 7.73067 7.93787 8.06470 8.28983 8.51273 9.01145 9.57646 11.06045 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.066122 B = 0.005672 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.359557 B = 4934.929511 C = 5031.791984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.246 4.246 3 C 0.034 3.966 4 N -0.480 5.480 5 C 0.070 3.930 6 C 0.129 3.871 7 N -0.682 5.682 8 C 0.194 3.806 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.901 3.099 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 S 0.138 5.862 18 H 0.072 0.928 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.169 0.831 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.336 0.664 25 H 0.031 0.969 26 H -0.009 1.009 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 3.495 -5.460 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.368 4.368 3 C -0.117 4.117 4 N -0.194 5.194 5 C -0.208 4.208 6 C -0.004 4.004 7 N -0.314 5.314 8 C 0.068 3.932 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.729 3.271 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 S 0.393 5.607 18 H 0.090 0.910 19 H 0.094 0.906 20 H 0.087 0.913 21 H 0.186 0.814 22 H 0.105 0.895 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.049 0.951 26 H 0.009 0.991 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.655 2.110 -5.427 16.703 hybrid contribution 0.590 1.573 0.659 1.805 sum -15.065 3.683 -4.768 16.225 Atomic orbital electron populations 1.20157 0.87170 1.03117 1.02488 1.25982 1.01468 0.95857 1.13498 1.21632 0.87176 0.99796 1.03125 1.66309 1.17550 1.19004 1.16558 1.27204 1.01375 0.90828 1.01361 1.20503 0.85648 0.99856 0.94392 1.60807 1.27390 1.35094 1.08157 1.19609 0.80778 0.95117 0.97709 1.21143 0.97797 1.44430 0.91975 0.91883 1.24983 0.96462 0.95433 0.97642 1.69957 1.06907 1.45354 1.31459 0.86452 0.77564 0.78536 0.84583 1.20570 1.21263 1.19830 1.83968 0.98394 1.10925 1.67428 0.90959 0.90595 0.91287 0.81396 0.89513 0.92848 0.84733 0.95074 0.99098 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.01 0.38 -0.22 15 2 C -0.25 -3.08 6.60 -35.92 -0.24 -3.32 15 3 C 0.03 0.48 11.25 -19.19 -0.22 0.26 15 4 N -0.48 -8.18 10.54 -11.86 -0.13 -8.31 15 5 C 0.07 1.19 6.90 -13.46 -0.09 1.10 15 6 C 0.13 2.39 6.26 -4.98 -0.03 2.36 15 7 N -0.68 -15.05 6.48 -116.34 -0.75 -15.81 15 8 C 0.19 5.10 5.44 -4.98 -0.03 5.07 15 9 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 15 10 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 12 N -0.90 -26.80 13.29 55.43 0.74 -26.06 15 13 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 15 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 17 S 0.14 1.95 23.18 -107.50 -2.49 -0.54 15 18 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.17 1.86 8.06 -52.49 -0.42 1.43 15 22 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.34 7.42 8.71 -39.29 -0.34 7.08 15 25 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 26 H -0.01 -0.24 8.14 -51.93 -0.42 -0.67 15 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 255.88 15.07 3.86 3.86 Total: -1.00 -30.75 255.88 -7.72 -38.47 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.27 Total: -0.15 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.65 Total: -8.25 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.14 Total: -50.18 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.49 Total: -0.54 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.75 -7.72 -38.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394721584.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.986 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds