Wall clock time and date at job start Sun Mar 29 2020 21:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.46865 * 2 1 4 4 C 1.46906 * 110.99660 * 199.75447 * 3 2 1 5 5 C 1.50697 * 109.47316 * 66.04699 * 4 3 2 6 6 H 1.08002 * 119.99629 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00168 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00042 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.46916 * 90.00145 * 9 7 5 11 11 H 1.48501 * 109.47020 * 209.99923 * 9 7 5 12 12 H 1.48497 * 109.47222 * 330.00087 * 9 7 5 13 13 C 1.46898 * 111.00180 * 75.80265 * 3 2 1 14 14 C 1.52995 * 109.47249 * 199.64295 * 13 3 2 15 15 C 1.53005 * 109.47291 * 174.86988 * 14 13 3 16 16 C 1.53777 * 113.61494 * 85.86187 * 15 14 13 17 17 C 1.54056 * 86.98279 * 140.02086 * 16 15 14 18 18 C 1.53775 * 87.07757 * 334.57164 * 17 16 15 19 19 H 1.09002 * 109.47629 * 174.85125 * 1 2 3 20 20 H 1.09007 * 109.47404 * 294.84834 * 1 2 3 21 21 H 1.09002 * 109.47745 * 54.85008 * 1 2 3 22 22 H 1.09001 * 109.46992 * 239.99819 * 2 1 3 23 23 H 1.08999 * 109.47210 * 119.99979 * 2 1 3 24 24 H 1.09004 * 109.47053 * 186.04992 * 4 3 2 25 25 H 1.09001 * 109.47179 * 306.04435 * 4 3 2 26 26 H 0.97002 * 120.00156 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.47062 * 79.64198 * 13 3 2 28 28 H 1.08999 * 109.46940 * 319.64638 * 13 3 2 29 29 H 1.08999 * 109.46864 * 54.87295 * 14 13 3 30 30 H 1.08999 * 109.47359 * 294.87321 * 14 13 3 31 31 H 1.09003 * 112.84767 * 314.66818 * 15 14 13 32 32 H 1.08991 * 113.61723 * 254.61618 * 16 15 14 33 33 H 1.09003 * 113.61433 * 25.52069 * 16 15 14 34 34 H 1.09001 * 113.61662 * 220.02431 * 17 16 15 35 35 H 1.08999 * 113.61338 * 89.11796 * 17 16 15 36 36 H 1.09013 * 113.61427 * 270.87994 * 18 17 16 37 37 H 1.08998 * 113.69302 * 139.99128 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4120 1.4511 -0.4636 5 6 3.4783 1.0474 -1.9139 6 1 2.5763 0.7691 -2.4387 7 6 4.6906 1.0322 -2.5706 8 7 4.7483 0.6804 -3.8365 9 14 6.2507 1.5129 -1.6626 10 1 6.8535 0.3063 -1.0415 11 1 7.2157 2.1117 -2.6193 12 1 5.9231 2.5026 -0.6052 13 6 1.8779 1.9935 1.3295 14 6 1.9208 3.5173 1.2002 15 6 1.6458 4.1530 2.5645 16 6 2.9018 4.3018 3.4392 17 6 2.3452 5.6745 3.8623 18 6 1.5826 5.6890 2.5270 19 1 -0.3634 -1.0235 -0.0922 20 1 -0.3634 0.4319 0.9326 21 1 -0.3635 0.5916 -0.8403 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.7840 2.4696 -0.3525 25 1 4.0253 0.7736 0.1306 26 1 5.6011 0.6701 -4.2986 27 1 2.6941 1.6601 1.9705 28 1 0.9261 1.6926 1.7672 29 1 1.1625 3.8430 0.4882 30 1 2.9056 3.8246 0.8481 31 1 0.8042 3.6939 3.0834 32 1 2.9542 3.5802 4.2543 33 1 3.8275 4.3636 2.8670 34 1 3.1072 6.4502 3.9384 35 1 1.6949 5.6315 4.7360 36 1 2.1484 6.1294 1.7058 37 1 0.5707 6.0865 2.6048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398601379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:18 Heat of formation + Delta-G solvation = 6.044342 kcal Electronic energy + Delta-G solvation = -14353.674829 eV Core-core repulsion = 12131.049917 eV Total energy + Delta-G solvation = -2222.624912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.90559 -36.91110 -32.57230 -31.45006 -29.75320 -26.96726 -25.54453 -24.18866 -22.09263 -21.42840 -19.53783 -19.24800 -16.81739 -15.54471 -15.12295 -14.82698 -14.24551 -13.75774 -13.59452 -13.21193 -12.67260 -12.44033 -12.35844 -12.15373 -11.87688 -11.27494 -11.16685 -10.97914 -10.80645 -10.67555 -10.46462 -10.40489 -10.03277 -9.89055 -9.73536 -9.70514 -9.16587 -8.54782 -7.30515 -6.02691 -3.99128 3.29334 3.36982 3.39528 4.44180 4.62108 4.74219 4.78585 4.91429 5.03498 5.29889 5.48966 5.64089 5.70613 5.80998 5.83653 5.86680 5.87202 5.94049 6.01324 6.06662 6.09203 6.19628 6.32746 6.35262 6.50150 6.62985 6.72915 6.78257 6.80060 6.97801 7.05400 7.67641 8.00599 8.15780 8.71173 9.06697 9.59774 11.10553 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.008815 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.080240 B = 3175.679077 C = 3994.551845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.529 5.529 4 C 0.161 3.839 5 C -0.507 4.507 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.056 3.944 14 C -0.103 4.103 15 C -0.108 4.108 16 C -0.139 4.139 17 C -0.144 4.144 18 C -0.137 4.137 19 H 0.047 0.953 20 H 0.041 0.959 21 H 0.061 0.939 22 H 0.089 0.911 23 H 0.016 0.984 24 H 0.029 0.971 25 H -0.020 1.020 26 H 0.263 0.737 27 H 0.021 0.979 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 5.847 13.753 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.253 5.253 4 C 0.035 3.965 5 C -0.546 4.546 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.073 4.073 14 C -0.141 4.141 15 C -0.127 4.127 16 C -0.177 4.177 17 C -0.181 4.181 18 C -0.174 4.174 19 H 0.066 0.934 20 H 0.060 0.940 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.034 0.966 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.669 6.085 13.264 15.655 hybrid contribution 1.486 -0.258 0.955 1.785 sum -4.184 5.827 14.219 15.926 Atomic orbital electron populations 1.21771 0.96454 1.00370 1.01349 1.21998 0.94468 0.90001 1.00947 1.61975 1.23609 1.17185 1.22504 1.20202 0.83967 0.95996 0.96349 1.21077 0.95340 1.44580 0.93559 0.90115 1.24901 0.98700 0.95028 0.94749 1.69898 1.25750 1.48824 1.09597 0.86879 0.83769 0.79236 0.79970 1.20426 1.21183 1.19189 1.22067 0.99406 0.94763 0.91055 1.21535 1.02424 0.94868 0.95271 1.22541 0.97965 0.95391 0.96788 1.23038 0.98214 0.96855 0.99563 1.22859 0.99843 0.97859 0.97572 1.22926 1.00304 0.96590 0.97622 0.93374 0.93974 0.92010 0.89254 0.96585 0.95268 1.00189 0.92731 0.96050 0.92143 0.91114 0.91853 0.89704 0.91963 0.90123 0.91875 0.90617 0.90071 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.96 37.16 0.37 -1.93 16 2 C 0.05 1.06 5.51 -3.83 -0.02 1.04 16 3 N -0.53 -11.29 4.36 -236.07 -1.03 -12.32 16 4 C 0.16 3.99 3.62 -4.97 -0.02 3.97 16 5 C -0.51 -14.59 8.79 -34.44 -0.30 -14.89 16 6 H 0.08 2.52 7.56 -52.49 -0.40 2.13 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 9 Si 0.87 21.82 27.47 -169.99 -4.67 17.15 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 0.98 4.80 -3.83 -0.02 0.96 16 14 C -0.10 -1.66 5.07 -26.73 -0.14 -1.79 16 15 C -0.11 -1.38 3.64 -89.81 -0.33 -1.71 16 16 C -0.14 -1.70 7.65 -25.78 -0.20 -1.89 16 17 C -0.14 -1.52 8.09 -25.78 -0.21 -1.72 16 18 C -0.14 -1.57 7.64 -25.92 -0.20 -1.77 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 20 H 0.04 0.62 6.90 -51.93 -0.36 0.26 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.09 2.00 6.58 -51.93 -0.34 1.65 16 23 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 24 H 0.03 0.73 5.77 -51.93 -0.30 0.43 16 25 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 28 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.06 7.92 -51.93 -0.41 0.65 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.97 8.10 -51.92 -0.42 0.55 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 289.82 15.07 4.37 4.37 Total: -1.00 -29.94 289.82 -8.40 -38.33 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.69 Total: -2.59 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.15 Total: -17.86 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.25 Total: -39.40 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.94 -8.40 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398601379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.377 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds