Wall clock time and date at job start Sun Mar 29 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31524 * 119.99474 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00536 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46849 * 89.99746 * 8 6 4 10 10 H 1.48499 * 109.47055 * 210.00004 * 8 6 4 11 11 H 1.48495 * 109.46765 * 330.00048 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.52996 * 109.47022 * 169.99926 * 14 12 2 16 16 C 1.53007 * 109.46799 * 180.02562 * 15 14 12 17 17 C 1.53778 * 113.61072 * 274.13158 * 16 15 14 18 18 C 1.53951 * 87.02007 * 220.05056 * 17 16 15 19 19 C 1.53781 * 87.11393 * 25.36598 * 18 17 16 20 20 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 22 22 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 23 23 H 0.96999 * 119.99619 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 25 25 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 26 26 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 27 27 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 28 28 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 29 29 H 1.08997 * 109.47190 * 299.99825 * 15 14 12 30 30 H 1.09001 * 109.47349 * 60.00258 * 15 14 12 31 31 H 1.08997 * 112.84950 * 45.33515 * 16 15 14 32 32 H 1.08993 * 113.62252 * 334.57391 * 17 16 15 33 33 H 1.09007 * 113.60884 * 105.47454 * 17 16 15 34 34 H 1.09009 * 113.53772 * 270.81446 * 18 17 16 35 35 H 1.08996 * 113.66786 * 139.93681 * 18 17 16 36 36 H 1.08994 * 113.61843 * 220.09130 * 19 18 17 37 37 H 1.09005 * 113.68814 * 89.19422 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4884 -0.5257 -3.5972 16 6 2.2110 0.2972 -4.8570 17 6 0.9188 -0.1082 -5.5854 18 6 1.6949 0.0851 -6.9008 19 6 2.9748 -0.1977 -6.0966 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.9041 -0.5274 4.4376 24 1 1.8663 -2.5522 -2.1648 25 1 0.3555 -1.9520 -1.4399 26 1 1.6466 -2.5988 -0.3991 27 1 0.6814 0.1052 -2.6087 28 1 2.1025 1.1188 -2.2603 29 1 3.5599 -0.5338 -3.3976 30 1 2.1387 -1.5474 -3.7460 31 1 2.2995 1.3706 -4.6894 32 1 0.6197 -1.1402 -5.4025 33 1 0.1014 0.6005 -5.4514 34 1 1.6410 1.1008 -7.2929 35 1 1.4758 -0.6723 -7.6534 36 1 3.8148 0.4386 -6.3748 37 1 3.2402 -1.2541 -6.0531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398632643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:09 Heat of formation + Delta-G solvation = 19.007614 kcal Electronic energy + Delta-G solvation = -14467.434520 eV Core-core repulsion = 12245.371737 eV Total energy + Delta-G solvation = -2222.062783 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.01955 -37.26707 -32.93917 -31.17931 -28.93869 -26.03521 -25.58173 -25.20179 -23.60571 -21.00176 -19.44002 -19.01529 -16.57529 -15.69438 -15.31138 -14.74700 -14.58849 -13.91053 -13.31771 -13.29762 -12.53014 -12.44823 -12.37458 -12.16572 -11.72453 -11.52726 -11.29727 -10.97402 -10.81376 -10.62300 -10.48279 -10.31835 -10.02708 -9.97214 -9.83649 -9.41958 -8.99492 -8.54882 -7.26015 -6.03307 -4.00658 3.27495 3.37894 3.40228 4.42424 4.57783 4.66083 4.72064 4.85245 5.02817 5.28642 5.42086 5.58526 5.73089 5.75917 5.77176 5.85032 5.86036 5.97291 6.07319 6.15681 6.20209 6.25152 6.31310 6.34040 6.44773 6.56237 6.60873 6.63559 6.79878 6.92372 7.24255 7.69071 8.01378 8.15586 8.71613 9.05115 9.59406 11.10011 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058644 B = 0.006589 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.339567 B = 4248.355236 C = 4423.387462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.180 3.820 3 H 0.037 0.963 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.525 5.525 13 C 0.032 3.968 14 C 0.054 3.946 15 C -0.105 4.105 16 C -0.109 4.109 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.137 4.137 20 H 0.056 0.944 21 H 0.043 0.957 22 H 0.027 0.973 23 H 0.263 0.737 24 H 0.047 0.953 25 H 0.015 0.985 26 H 0.077 0.923 27 H 0.023 0.977 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 2.007 -16.939 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.072 3.928 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.248 5.248 13 C -0.116 4.116 14 C -0.075 4.075 15 C -0.142 4.142 16 C -0.128 4.128 17 C -0.175 4.175 18 C -0.181 4.181 19 C -0.174 4.174 20 H 0.075 0.925 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.687 1.951 -16.685 16.883 hybrid contribution -1.624 0.948 0.214 1.893 sum -3.311 2.899 -16.471 17.049 Atomic orbital electron populations 1.22812 1.01818 1.00982 0.98745 1.19786 0.88635 0.95200 0.89195 0.94491 1.20964 1.31270 1.13684 0.87821 0.90041 1.24925 0.95944 0.96591 0.95848 1.69888 1.45913 1.40386 0.97825 0.86882 0.80529 0.83999 0.76854 1.20854 1.22453 1.19415 1.62158 1.58542 1.02453 1.01653 1.22302 0.95827 0.91755 1.01752 1.22078 0.97093 0.97557 0.90769 1.21578 1.01315 0.98553 0.92788 1.22541 0.96100 1.00135 0.93983 1.23003 0.96913 1.01616 0.96003 1.22843 0.97270 1.01370 0.96656 1.22927 0.96660 1.01426 0.96424 0.92514 0.93841 0.95397 0.92706 0.93437 0.96690 0.90416 0.95871 0.91845 0.91241 0.92100 0.89517 0.90260 0.91904 0.90558 0.91881 0.91823 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 7.92 37.16 0.29 -3.84 16 2 C 0.18 4.34 1.90 -68.86 -0.13 4.21 16 3 H 0.04 0.93 6.99 -51.93 -0.36 0.57 16 4 C -0.50 -14.16 8.49 -34.44 -0.29 -14.45 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 6 C 0.07 1.98 5.45 -17.81 -0.10 1.88 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.89 22.25 24.37 -169.99 -4.14 18.10 16 9 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.53 -11.09 4.70 -236.28 -1.11 -12.20 16 13 C 0.03 0.62 8.45 60.07 0.51 1.13 16 14 C 0.05 0.93 4.53 -3.82 -0.02 0.91 16 15 C -0.10 -1.49 4.96 -26.73 -0.13 -1.63 16 16 C -0.11 -1.29 3.64 -89.80 -0.33 -1.61 16 17 C -0.14 -1.50 7.65 -25.83 -0.20 -1.70 16 18 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 19 C -0.14 -1.40 7.65 -25.91 -0.20 -1.60 16 20 H 0.06 1.24 6.42 -51.93 -0.33 0.91 16 21 H 0.04 1.01 3.27 -51.92 -0.17 0.84 16 22 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16 25 H 0.01 0.28 6.46 -51.93 -0.34 -0.06 16 26 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 27 H 0.02 0.40 7.06 -51.93 -0.37 0.03 16 28 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.86 6.29 -51.93 -0.33 0.53 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 33 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -29.67 277.34 -7.39 -37.06 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.29 Total: -1.89 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -0.80 Total: -18.26 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.34 Total: -39.19 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.67 -7.39 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398632643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.069 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds