Wall clock time and date at job start Sun Mar 29 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31524 * 119.99474 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00536 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46849 * 89.99746 * 8 6 4 10 10 H 1.48499 * 109.47055 * 210.00004 * 8 6 4 11 11 H 1.48495 * 109.46765 * 330.00048 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.52996 * 109.47022 * 169.99926 * 14 12 2 16 16 C 1.53007 * 109.46799 * 180.02562 * 15 14 12 17 17 C 1.53778 * 113.61072 * 274.13158 * 16 15 14 18 18 C 1.53951 * 87.02007 * 220.05056 * 17 16 15 19 19 C 1.53781 * 87.11393 * 25.36598 * 18 17 16 20 20 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 22 22 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 23 23 H 0.96999 * 119.99619 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 25 25 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 26 26 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 27 27 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 28 28 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 29 29 H 1.08997 * 109.47190 * 299.99825 * 15 14 12 30 30 H 1.09001 * 109.47349 * 60.00258 * 15 14 12 31 31 H 1.08997 * 112.84950 * 45.33515 * 16 15 14 32 32 H 1.08993 * 113.62252 * 334.57391 * 17 16 15 33 33 H 1.09007 * 113.60884 * 105.47454 * 17 16 15 34 34 H 1.09009 * 113.53772 * 270.81446 * 18 17 16 35 35 H 1.08996 * 113.66786 * 139.93681 * 18 17 16 36 36 H 1.08994 * 113.61843 * 220.09130 * 19 18 17 37 37 H 1.09005 * 113.68814 * 89.19422 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8726 2.6998 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4884 -0.5257 -3.5972 16 6 2.2110 0.2972 -4.8570 17 6 0.9188 -0.1082 -5.5854 18 6 1.6949 0.0851 -6.9008 19 6 2.9748 -0.1977 -6.0966 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.9041 -0.5274 4.4376 24 1 1.8663 -2.5522 -2.1648 25 1 0.3555 -1.9520 -1.4399 26 1 1.6466 -2.5988 -0.3991 27 1 0.6814 0.1052 -2.6087 28 1 2.1025 1.1188 -2.2603 29 1 3.5599 -0.5338 -3.3976 30 1 2.1387 -1.5474 -3.7460 31 1 2.2995 1.3706 -4.6894 32 1 0.6197 -1.1402 -5.4025 33 1 0.1014 0.6005 -5.4514 34 1 1.6410 1.1008 -7.2929 35 1 1.4758 -0.6723 -7.6534 36 1 3.8148 0.4386 -6.3748 37 1 3.2402 -1.2541 -6.0531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398632643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:09 Heat of formation + Delta-G solvation = -0.084541 kcal Electronic energy + Delta-G solvation = -14468.262418 eV Core-core repulsion = 12245.371737 eV Total energy + Delta-G solvation = -2222.890681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03530 -38.80456 -34.90256 -32.84833 -30.52603 -27.46696 -27.21811 -26.41839 -24.93243 -22.37071 -20.87978 -20.16090 -18.68055 -17.18952 -16.47612 -16.37092 -15.96924 -15.20581 -15.00603 -14.90148 -14.14443 -13.93652 -13.69680 -13.25931 -13.20726 -12.96215 -12.93094 -12.51515 -12.39203 -12.07482 -11.82906 -11.59749 -11.48709 -11.33766 -11.16110 -10.93589 -10.80720 -10.70453 -8.90342 -8.27469 -6.29719 1.28795 1.34782 1.44934 2.31926 3.06495 3.27463 3.78944 3.82930 3.95395 4.05895 4.23016 4.39800 4.46335 4.52996 4.62683 4.66252 4.71427 4.76566 4.83849 4.91315 4.94266 4.97587 4.99027 5.12789 5.13384 5.18582 5.26202 5.37881 5.44020 5.52473 5.64398 5.70895 6.07540 6.45492 6.73694 6.77325 7.34925 8.89615 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058644 B = 0.006589 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.339567 B = 4248.355236 C = 4423.387462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.182 3.818 3 H 0.030 0.970 4 C -0.502 4.502 5 H 0.038 0.962 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.545 5.545 13 C 0.038 3.962 14 C 0.056 3.944 15 C -0.095 4.095 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.135 4.135 20 H 0.054 0.946 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.265 0.735 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 3.278 -19.186 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.073 3.927 3 H 0.048 0.952 4 C -0.540 4.540 5 H 0.056 0.944 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.225 1.225 11 H -0.175 1.175 12 N -0.268 5.268 13 C -0.110 4.110 14 C -0.072 4.072 15 C -0.133 4.133 16 C -0.131 4.131 17 C -0.177 4.177 18 C -0.173 4.173 19 C -0.173 4.173 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.954 3.218 -18.969 19.465 hybrid contribution -1.143 0.466 0.877 1.514 sum -4.097 3.684 -18.092 18.912 Atomic orbital electron populations 1.22673 0.99934 1.01304 0.99808 1.19585 0.89980 0.94280 0.88815 0.95181 1.21202 1.30307 1.12474 0.90058 0.94407 1.25775 0.97521 0.99955 0.95362 1.70043 1.47949 1.42574 0.98517 0.85836 0.79002 0.80134 0.77263 1.19451 1.22518 1.17450 1.62061 1.59224 1.03311 1.02187 1.22226 0.96613 0.90888 1.01244 1.22152 0.98016 0.97097 0.89939 1.21496 1.00147 0.98952 0.92716 1.22553 0.97527 0.99791 0.93231 1.23020 0.96517 1.01540 0.96624 1.22820 0.96005 1.02261 0.96229 1.22928 0.97247 1.01550 0.95538 0.92653 0.94598 0.92325 0.92584 0.90729 0.95615 0.93709 0.95008 0.92114 0.92340 0.91847 0.89436 0.90418 0.91730 0.89663 0.90871 0.91194 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.56 7.92 71.98 0.57 -6.99 16 2 C 0.18 8.66 1.90 44.17 0.08 8.74 16 3 H 0.03 1.48 6.99 -2.39 -0.02 1.46 16 4 C -0.50 -29.15 8.49 25.60 0.22 -28.93 16 5 H 0.04 2.46 7.37 -2.91 -0.02 2.44 16 6 C 0.01 0.63 5.45 84.65 0.46 1.09 16 7 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 8 Si 0.95 45.51 24.37 68.60 1.67 47.18 16 9 H -0.27 -12.23 6.87 99.48 0.68 -11.54 16 10 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.25 -11.15 6.53 99.48 0.65 -10.50 16 12 N -0.54 -22.56 4.70 -901.45 -4.24 -26.80 16 13 C 0.04 1.46 8.45 127.69 1.08 2.54 16 14 C 0.06 1.82 4.53 86.30 0.39 2.21 16 15 C -0.10 -2.53 4.96 30.60 0.15 -2.38 16 16 C -0.11 -2.37 3.64 -10.26 -0.04 -2.41 16 17 C -0.14 -2.63 7.65 31.18 0.24 -2.39 16 18 C -0.14 -2.15 8.09 31.18 0.25 -1.89 16 19 C -0.14 -2.41 7.65 31.12 0.24 -2.17 16 20 H 0.05 2.33 6.42 -2.39 -0.02 2.31 16 21 H 0.04 1.57 3.27 -2.38 -0.01 1.56 16 22 H 0.06 2.11 6.91 -2.39 -0.02 2.09 16 23 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.07 2.40 6.47 -2.39 -0.02 2.38 16 25 H 0.03 0.91 6.46 -2.39 -0.02 0.90 16 26 H 0.04 1.98 6.76 -2.38 -0.02 1.96 16 27 H 0.03 0.99 7.06 -2.39 -0.02 0.97 16 28 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.64 6.29 -2.39 -0.02 1.63 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 1.49 7.92 -2.39 -0.02 1.47 16 33 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 Total: -1.00 -64.38 277.34 2.32 -62.06 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.94 Total: 10.02 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 3.65 Total: -32.59 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.94 Total: -86.67 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -64.38 2.32 -62.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398632643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.975 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds