Wall clock time and date at job start Sun Mar 29 2020 21:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46886 * 2 1 4 4 C 1.50699 * 109.46884 * 119.99401 * 2 1 3 5 5 H 1.07998 * 120.00083 * 119.99746 * 4 2 1 6 6 C 1.37879 * 120.00313 * 300.00389 * 4 2 1 7 7 N 1.31518 * 119.99993 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47070 * 59.99576 * 8 6 4 10 10 H 1.48501 * 109.46956 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47013 * 299.99621 * 8 6 4 12 12 N 1.46895 * 109.47355 * 239.99826 * 2 1 3 13 13 C 1.46906 * 110.99679 * 306.04285 * 12 2 1 14 14 C 1.46892 * 111.00111 * 69.99832 * 12 2 1 15 15 C 1.53005 * 109.47205 * 169.99938 * 14 12 2 16 16 C 1.52997 * 109.47511 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47365 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49888 * 116.25530 * 17 16 15 19 19 C 1.53000 * 117.50107 * 184.91292 * 17 16 15 20 20 H 1.08994 * 109.46776 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47196 * 300.00268 * 1 2 3 22 22 H 1.09004 * 109.46463 * 60.00444 * 1 2 3 23 23 H 0.96994 * 120.00272 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.46570 * 183.95201 * 13 12 2 25 25 H 1.08988 * 109.47418 * 303.95635 * 13 12 2 26 26 H 1.09003 * 109.46732 * 63.96155 * 13 12 2 27 27 H 1.08997 * 109.47263 * 50.00603 * 14 12 2 28 28 H 1.08991 * 109.47836 * 289.99962 * 14 12 2 29 29 H 1.09002 * 109.47130 * 59.99925 * 15 14 12 30 30 H 1.09004 * 109.47245 * 300.00342 * 15 14 12 31 31 H 1.09002 * 109.47067 * 59.99785 * 16 15 14 32 32 H 1.09004 * 109.47062 * 300.00352 * 16 15 14 33 33 H 1.09002 * 115.54951 * 330.58504 * 17 16 15 34 34 H 1.09000 * 117.49996 * 215.00804 * 18 17 16 35 35 H 1.08999 * 117.49664 * 0.02562 * 18 17 16 36 36 H 1.09008 * 117.49673 * 359.97438 * 19 17 16 37 37 H 1.08999 * 117.49959 * 144.99502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8266 -0.4196 5.2205 11 1 1.8279 -2.5195 4.0084 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0356 -1.3076 14 6 1.7530 0.0971 -2.4089 15 6 2.4886 -0.5258 -3.5972 16 6 2.2114 0.2969 -4.8570 17 6 2.9475 -0.3256 -6.0450 18 6 2.0983 -0.8774 -7.1918 19 6 2.8903 0.4189 -7.3804 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 0.7087 1.1616 3.4843 24 1 1.8666 -2.5522 -2.1646 25 1 1.6466 -2.5987 -0.3990 26 1 0.3556 -1.9521 -1.4398 27 1 2.1026 1.1187 -2.2604 28 1 0.6816 0.1052 -2.6088 29 1 2.1391 -1.5475 -3.7458 30 1 3.5602 -0.5339 -3.3974 31 1 2.5612 1.3185 -4.7080 32 1 1.1399 0.3054 -5.0569 33 1 3.8697 -0.8537 -5.8023 34 1 2.4617 -1.7685 -7.7036 35 1 1.0152 -0.7964 -7.1001 36 1 2.3278 1.3521 -7.4127 37 1 3.7748 0.3806 -8.0162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400716107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:15 Heat of formation + Delta-G solvation = 12.775225 kcal Electronic energy + Delta-G solvation = -14134.226417 eV Core-core repulsion = 11911.893378 eV Total energy + Delta-G solvation = -2222.333039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.98633 -37.01904 -33.37982 -31.79262 -28.54910 -26.56578 -25.16422 -24.14056 -22.44886 -20.98446 -20.36562 -18.95921 -16.08844 -15.77721 -14.96583 -14.87896 -14.40708 -14.06488 -13.40162 -13.13986 -12.47964 -11.95808 -11.82336 -11.60632 -11.55910 -11.22540 -11.02609 -10.86059 -10.71635 -10.62872 -10.50777 -10.21444 -10.15413 -9.98854 -9.77543 -9.59803 -8.83509 -8.33763 -7.06299 -5.96315 -3.99752 3.35562 3.39458 3.42733 3.75887 4.44304 4.60924 4.88384 4.90087 5.20092 5.30953 5.35380 5.49948 5.53982 5.63036 5.78487 5.99257 6.02132 6.04816 6.11701 6.19016 6.28390 6.37438 6.43931 6.65260 6.70638 6.73734 6.87935 6.95772 7.18983 7.54020 7.76370 7.89782 8.20943 8.45008 8.67421 9.06300 9.65008 11.10856 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068836 B = 0.005400 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.665445 B = 5183.965082 C = 5283.733937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.209 3.791 3 H 0.037 0.963 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.034 3.966 14 C 0.055 3.945 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.146 4.146 18 C -0.184 4.184 19 C -0.186 4.186 20 H 0.030 0.970 21 H 0.087 0.913 22 H 0.005 0.995 23 H 0.260 0.740 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -1.896 -14.368 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.103 3.897 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.115 4.115 14 C -0.074 4.074 15 C -0.149 4.149 16 C -0.126 4.126 17 C -0.164 4.164 18 C -0.221 4.221 19 C -0.223 4.223 20 H 0.049 0.951 21 H 0.106 0.894 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.733 -1.826 -14.161 14.383 hybrid contribution -0.673 -0.322 0.756 1.062 sum 1.060 -2.148 -13.406 13.618 Atomic orbital electron populations 1.22392 1.00940 0.99316 1.00357 1.19308 0.89712 0.94442 0.86221 0.94511 1.21092 1.30396 1.12414 0.89707 0.92059 1.24935 0.95299 0.95167 0.98974 1.69880 1.37186 1.23109 1.23415 0.86583 0.79223 0.79581 0.82128 1.20245 1.21434 1.20409 1.62320 1.58788 1.02468 1.02421 1.22243 0.96032 0.92159 1.01019 1.22031 0.96855 0.97639 0.90868 1.21579 1.01344 0.98987 0.92985 1.21176 0.99170 0.99199 0.93098 1.22395 1.01130 1.03218 0.89670 1.23027 0.98468 0.97306 1.03285 1.22964 1.02660 0.96170 1.00510 0.95078 0.89448 0.97554 0.93022 0.93822 0.91095 0.96705 0.91831 0.96049 0.92265 0.91470 0.91676 0.92248 0.87842 0.89195 0.88953 0.88971 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.22 37.16 0.31 -3.94 16 2 C 0.21 5.40 2.31 -68.87 -0.16 5.24 16 3 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 4 C -0.50 -13.87 7.91 -34.44 -0.27 -14.14 16 5 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.54 -11.87 4.70 -236.29 -1.11 -12.98 16 13 C 0.03 0.69 8.45 60.07 0.51 1.20 16 14 C 0.05 1.02 4.53 -3.83 -0.02 1.00 16 15 C -0.11 -1.68 5.10 -26.73 -0.14 -1.81 16 16 C -0.09 -1.12 5.49 -26.73 -0.15 -1.26 16 17 C -0.15 -1.63 5.73 -90.62 -0.52 -2.15 16 18 C -0.18 -1.84 10.18 -26.69 -0.27 -2.11 16 19 C -0.19 -1.81 10.25 -26.70 -0.27 -2.09 16 20 H 0.03 0.75 6.41 -51.93 -0.33 0.41 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 22 H 0.01 0.13 6.91 -51.93 -0.36 -0.23 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.04 0.76 6.47 -51.93 -0.34 0.43 16 25 H 0.07 1.53 6.76 -51.94 -0.35 1.18 16 26 H 0.01 0.29 6.46 -51.93 -0.34 -0.04 16 27 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 28 H 0.02 0.40 7.06 -51.93 -0.37 0.04 16 29 H 0.06 0.89 6.55 -51.93 -0.34 0.55 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.74 7.88 -51.93 -0.41 0.33 16 33 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 289.05 15.07 4.36 4.36 Total: -1.00 -28.37 289.05 -8.65 -37.03 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.43 Total: -1.17 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.08 Total: -18.56 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.48 Total: -38.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.37 -8.65 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400716107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.805 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds