Wall clock time and date at job start Sun Mar 29 2020 21:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46886 * 2 1 4 4 C 1.50699 * 109.46884 * 119.99401 * 2 1 3 5 5 H 1.07998 * 120.00083 * 119.99746 * 4 2 1 6 6 C 1.37879 * 120.00313 * 300.00389 * 4 2 1 7 7 N 1.31518 * 119.99993 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47070 * 59.99576 * 8 6 4 10 10 H 1.48501 * 109.46956 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47013 * 299.99621 * 8 6 4 12 12 N 1.46895 * 109.47355 * 239.99826 * 2 1 3 13 13 C 1.46906 * 110.99679 * 306.04285 * 12 2 1 14 14 C 1.46892 * 111.00111 * 69.99832 * 12 2 1 15 15 C 1.53005 * 109.47205 * 169.99938 * 14 12 2 16 16 C 1.52997 * 109.47511 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47365 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49888 * 116.25530 * 17 16 15 19 19 C 1.53000 * 117.50107 * 184.91292 * 17 16 15 20 20 H 1.08994 * 109.46776 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47196 * 300.00268 * 1 2 3 22 22 H 1.09004 * 109.46463 * 60.00444 * 1 2 3 23 23 H 0.96994 * 120.00272 * 179.97438 * 7 6 4 24 24 H 1.09004 * 109.46570 * 183.95201 * 13 12 2 25 25 H 1.08988 * 109.47418 * 303.95635 * 13 12 2 26 26 H 1.09003 * 109.46732 * 63.96155 * 13 12 2 27 27 H 1.08997 * 109.47263 * 50.00603 * 14 12 2 28 28 H 1.08991 * 109.47836 * 289.99962 * 14 12 2 29 29 H 1.09002 * 109.47130 * 59.99925 * 15 14 12 30 30 H 1.09004 * 109.47245 * 300.00342 * 15 14 12 31 31 H 1.09002 * 109.47067 * 59.99785 * 16 15 14 32 32 H 1.09004 * 109.47062 * 300.00352 * 16 15 14 33 33 H 1.09002 * 115.54951 * 330.58504 * 17 16 15 34 34 H 1.09000 * 117.49996 * 215.00804 * 18 17 16 35 35 H 1.08999 * 117.49664 * 0.02562 * 18 17 16 36 36 H 1.09008 * 117.49673 * 359.97438 * 19 17 16 37 37 H 1.08999 * 117.49959 * 144.99502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3224 -1.1193 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8266 -0.4196 5.2205 11 1 1.8279 -2.5195 4.0084 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0356 -1.3076 14 6 1.7530 0.0971 -2.4089 15 6 2.4886 -0.5258 -3.5972 16 6 2.2114 0.2969 -4.8570 17 6 2.9475 -0.3256 -6.0450 18 6 2.0983 -0.8774 -7.1918 19 6 2.8903 0.4189 -7.3804 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 0.7087 1.1616 3.4843 24 1 1.8666 -2.5522 -2.1646 25 1 1.6466 -2.5987 -0.3990 26 1 0.3556 -1.9521 -1.4398 27 1 2.1026 1.1187 -2.2604 28 1 0.6816 0.1052 -2.6088 29 1 2.1391 -1.5475 -3.7458 30 1 3.5602 -0.5339 -3.3974 31 1 2.5612 1.3185 -4.7080 32 1 1.1399 0.3054 -5.0569 33 1 3.8697 -0.8537 -5.8023 34 1 2.4617 -1.7685 -7.7036 35 1 1.0152 -0.7964 -7.1001 36 1 2.3278 1.3521 -7.4127 37 1 3.7748 0.3806 -8.0162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400716107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:15 Heat of formation + Delta-G solvation = -3.071584 kcal Electronic energy + Delta-G solvation = -14134.913587 eV Core-core repulsion = 11911.893378 eV Total energy + Delta-G solvation = -2223.020209 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.33319 -38.29248 -35.15995 -33.39598 -30.40053 -28.05516 -27.25506 -25.69635 -23.20617 -22.50777 -21.32587 -20.70557 -18.20249 -17.07158 -16.51080 -16.31496 -15.77107 -15.51720 -14.94709 -14.64445 -14.24048 -13.57961 -13.34621 -13.04694 -12.74075 -12.72431 -12.54948 -12.48277 -12.31525 -12.28672 -12.04895 -12.02323 -11.66663 -11.40925 -11.05955 -10.81446 -10.67667 -10.48184 -8.83185 -8.09582 -6.20802 1.43614 1.45480 1.53124 2.44097 2.96027 3.19096 3.38703 3.86455 4.05355 4.09344 4.20461 4.35857 4.47574 4.59523 4.65566 4.75997 4.77393 4.82485 4.88357 4.91641 4.95729 4.99220 5.11371 5.15729 5.18878 5.30268 5.33493 5.40765 5.52159 5.53957 5.71050 5.80709 6.22796 6.51165 6.77786 6.92668 7.48506 8.96484 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068836 B = 0.005400 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.665445 B = 5183.965082 C = 5283.733937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.549 5.549 13 C 0.039 3.961 14 C 0.056 3.944 15 C -0.098 4.098 16 C -0.082 4.082 17 C -0.161 4.161 18 C -0.181 4.181 19 C -0.179 4.179 20 H 0.033 0.967 21 H 0.060 0.940 22 H 0.022 0.978 23 H 0.261 0.739 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.015 0.985 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -2.822 -15.468 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.272 5.272 13 C -0.109 4.109 14 C -0.073 4.073 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.179 4.179 18 C -0.218 4.218 19 C -0.216 4.216 20 H 0.052 0.948 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.048 -2.759 -15.283 15.665 hybrid contribution -0.770 -0.008 1.046 1.299 sum 1.278 -2.767 -14.237 14.560 Atomic orbital electron populations 1.22187 1.00364 0.99193 0.99811 1.19084 0.90036 0.92797 0.87577 0.97942 1.21358 1.30600 1.12472 0.90946 0.92589 1.25722 0.95404 0.95833 1.01901 1.70011 1.37956 1.24232 1.24064 0.85570 0.78703 0.78665 0.78431 1.19806 1.20972 1.19594 1.62236 1.59097 1.03399 1.02472 1.22222 0.96202 0.91043 1.01453 1.22103 0.97344 0.97098 0.90708 1.21457 1.00373 0.99318 0.92459 1.21077 0.99573 0.98769 0.92528 1.22317 1.01428 1.04455 0.89679 1.23110 0.98483 0.97924 1.02285 1.23048 1.03065 0.96231 0.99273 0.94812 0.92068 0.95908 0.92982 0.90748 0.92865 0.96616 0.92859 0.96040 0.91766 0.91984 0.91835 0.92008 0.87843 0.88126 0.88861 0.88686 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.81 8.22 71.98 0.59 -7.22 16 2 C 0.21 11.13 2.31 44.17 0.10 11.23 16 3 H 0.00 0.15 7.93 -2.38 -0.02 0.14 16 4 C -0.52 -29.02 7.91 25.60 0.20 -28.82 16 5 H 0.06 3.14 7.12 -2.91 -0.02 3.12 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -53.94 11.32 21.45 0.24 -53.70 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 N -0.55 -24.14 4.70 -901.49 -4.24 -28.38 16 13 C 0.04 1.53 8.45 127.69 1.08 2.61 16 14 C 0.06 2.04 4.53 86.31 0.39 2.43 16 15 C -0.10 -2.82 5.10 30.60 0.16 -2.66 16 16 C -0.08 -1.92 5.49 30.59 0.17 -1.75 16 17 C -0.16 -3.24 5.73 -10.79 -0.06 -3.31 16 18 C -0.18 -3.16 10.18 30.62 0.31 -2.85 16 19 C -0.18 -3.05 10.25 30.62 0.31 -2.74 16 20 H 0.03 1.62 6.41 -2.39 -0.02 1.60 16 21 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 22 H 0.02 1.01 6.91 -2.38 -0.02 1.00 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.07 2.44 6.47 -2.39 -0.02 2.42 16 25 H 0.05 2.26 6.76 -2.39 -0.02 2.24 16 26 H 0.02 0.60 6.46 -2.39 -0.02 0.59 16 27 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 28 H 0.02 0.78 7.06 -2.39 -0.02 0.77 16 29 H 0.06 1.78 6.55 -2.39 -0.02 1.76 16 30 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.42 7.88 -2.38 -0.02 1.40 16 33 H 0.10 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.61 8.03 -2.39 -0.02 1.59 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -59.97 289.05 2.74 -57.23 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.01 Total: 10.64 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 3.70 Total: -32.09 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -4.00 Total: -82.08 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -59.97 2.74 -57.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400716107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.157 kcal (2) G-P(sol) polarization free energy of solvation -59.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds