Wall clock time and date at job start Sun Mar 29 2020 21:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 C 1.52997 * 109.47309 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46924 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49836 * 243.74343 * 17 16 15 19 19 C 1.53004 * 117.49784 * 175.08461 * 17 16 15 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 25 25 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 26 26 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 27 27 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 28 28 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 29 29 H 1.09005 * 109.46615 * 299.99921 * 15 14 12 30 30 H 1.08997 * 109.47044 * 59.99281 * 15 14 12 31 31 H 1.09001 * 109.46737 * 299.99232 * 16 15 14 32 32 H 1.08991 * 109.47373 * 59.99823 * 16 15 14 33 33 H 1.09002 * 115.54697 * 29.41704 * 17 16 15 34 34 H 1.08997 * 117.49587 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.49545 * 145.02153 * 18 17 16 36 36 H 1.08996 * 117.49965 * 214.98438 * 19 17 16 37 37 H 1.08995 * 117.49643 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 6 1.3714 -0.2106 4.9064 17 6 1.6850 -1.0888 6.1195 18 6 0.5017 -1.6323 6.9229 19 6 1.3745 -0.5173 7.5045 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 3.9186 0.2053 1.1592 25 1 3.8209 -1.3114 2.0860 26 1 3.8030 -1.3529 0.3068 27 1 2.0518 0.9348 2.5280 28 1 0.4722 0.1325 2.3564 29 1 1.3594 -1.8651 3.5273 30 1 2.9390 -1.0628 3.6989 31 1 1.8743 0.7505 5.0136 32 1 0.2950 -0.0522 4.8415 33 1 2.5637 -1.7265 6.0236 34 1 -0.5000 -1.3647 6.5869 35 1 0.6022 -2.6276 7.3558 36 1 2.0487 -0.7795 8.3198 37 1 0.9465 0.4840 7.5513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400716108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:17 Heat of formation + Delta-G solvation = 13.937907 kcal Electronic energy + Delta-G solvation = -14117.257785 eV Core-core repulsion = 11894.975164 eV Total energy + Delta-G solvation = -2222.282622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -37.94953 -36.88449 -33.36177 -31.74147 -29.05237 -26.88525 -24.70869 -23.73582 -22.43982 -20.97063 -20.36521 -19.12431 -16.23274 -15.69247 -15.32545 -14.60874 -14.36901 -13.78170 -13.56250 -13.25212 -12.39132 -12.01142 -11.85244 -11.64507 -11.59653 -11.19187 -11.04831 -10.92051 -10.69398 -10.66990 -10.24920 -10.10012 -10.03802 -9.98700 -9.84727 -9.54479 -8.81024 -8.38084 -7.08889 -5.97382 -4.01713 3.34424 3.38467 3.41558 3.76601 4.43038 4.61255 4.88836 4.90953 5.17971 5.31738 5.34688 5.46431 5.55240 5.68390 5.79634 5.95462 6.02268 6.05278 6.15081 6.16521 6.28811 6.37418 6.45908 6.63755 6.72098 6.85580 6.91957 7.10515 7.21754 7.57954 7.79307 7.87119 8.27297 8.38261 8.67557 9.04908 9.63066 11.09502 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.069025 B = 0.005463 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.553836 B = 5124.040102 C = 5301.842652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.539 5.539 13 C 0.037 3.963 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.182 4.182 19 C -0.187 4.187 20 H 0.008 0.992 21 H 0.084 0.916 22 H 0.034 0.966 23 H 0.260 0.740 24 H 0.009 0.991 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 -2.086 14.251 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.105 3.895 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.264 5.264 13 C -0.111 4.111 14 C -0.079 4.079 15 C -0.149 4.149 16 C -0.126 4.126 17 C -0.164 4.164 18 C -0.219 4.219 19 C -0.224 4.224 20 H 0.027 0.973 21 H 0.103 0.897 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.035 0.965 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.578 -2.438 14.078 14.300 hybrid contribution 0.628 0.420 -0.827 1.120 sum 1.206 -2.017 13.251 13.458 Atomic orbital electron populations 1.21848 0.97816 0.99596 0.99798 1.19238 0.92299 0.91918 0.86052 0.98621 1.21141 1.30958 1.12228 0.89834 0.91945 1.24941 0.95248 0.95101 0.99003 1.69889 1.36978 1.23091 1.23434 0.86583 0.79055 0.79770 0.82118 1.21378 1.20372 1.20225 1.62122 1.09117 1.52792 1.02332 1.22220 0.89052 0.98918 1.00946 1.22125 1.00690 0.94446 0.90592 1.21577 1.00827 0.99646 0.92802 1.21175 1.01008 0.97750 0.92706 1.22385 0.99608 1.02447 0.92004 1.23028 0.96037 0.98203 1.04651 1.22965 1.03946 0.98499 0.96985 0.97297 0.89732 0.94717 0.92988 0.97265 0.93740 0.90856 0.96494 0.90977 0.91417 0.92360 0.91980 0.91951 0.87961 0.88824 0.89175 0.89203 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.76 37.16 0.33 -3.00 16 2 C 0.21 5.50 2.06 -68.87 -0.14 5.36 16 3 H 0.00 -0.11 8.14 -51.92 -0.42 -0.53 16 4 C -0.50 -14.06 7.93 -34.44 -0.27 -14.33 16 5 H 0.06 1.73 6.39 -52.49 -0.34 1.40 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.54 -12.04 4.62 -236.29 -1.09 -13.14 16 13 C 0.04 0.76 9.05 60.06 0.54 1.30 16 14 C 0.05 0.94 4.77 -3.82 -0.02 0.92 16 15 C -0.11 -1.68 5.10 -26.73 -0.14 -1.82 16 16 C -0.09 -1.12 5.50 -26.73 -0.15 -1.27 16 17 C -0.15 -1.64 5.73 -90.61 -0.52 -2.16 16 18 C -0.18 -1.85 10.18 -26.69 -0.27 -2.12 16 19 C -0.19 -1.82 10.26 -26.69 -0.27 -2.10 16 20 H 0.01 0.19 6.20 -51.93 -0.32 -0.14 16 21 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 22 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.04 0.77 6.30 -51.93 -0.33 0.45 16 26 H 0.07 1.58 6.23 -51.93 -0.32 1.26 16 27 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 28 H 0.07 1.38 5.83 -51.93 -0.30 1.08 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.87 6.47 -51.93 -0.34 0.53 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 34 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 290.49 15.07 4.38 4.38 Total: -1.00 -28.65 290.49 -8.56 -37.21 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.45 Total: -2.04 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.01 Total: -17.68 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.47 Total: -38.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.65 -8.56 -37.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400716108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.146 kcal (2) G-P(sol) polarization free energy of solvation -28.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds