Wall clock time and date at job start Sun Mar 29 2020 21:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46896 * 110.99810 * 176.05144 * 12 2 1 14 14 C 1.46898 * 110.99849 * 300.00319 * 12 2 1 15 15 C 1.53002 * 109.47202 * 170.00325 * 14 12 2 16 16 C 1.52997 * 109.47309 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46924 * 179.97438 * 16 15 14 18 18 C 1.53001 * 117.49836 * 243.74343 * 17 16 15 19 19 C 1.53004 * 117.49784 * 175.08461 * 17 16 15 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08996 * 109.47680 * 59.99996 * 13 12 2 25 25 H 1.09002 * 109.47001 * 180.02562 * 13 12 2 26 26 H 1.09001 * 109.47142 * 300.00084 * 13 12 2 27 27 H 1.09005 * 109.47272 * 289.99844 * 14 12 2 28 28 H 1.08997 * 109.47709 * 50.00013 * 14 12 2 29 29 H 1.09005 * 109.46615 * 299.99921 * 15 14 12 30 30 H 1.08997 * 109.47044 * 59.99281 * 15 14 12 31 31 H 1.09001 * 109.46737 * 299.99232 * 16 15 14 32 32 H 1.08991 * 109.47373 * 59.99823 * 16 15 14 33 33 H 1.09002 * 115.54697 * 29.41704 * 17 16 15 34 34 H 1.08997 * 117.49587 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.49545 * 145.02153 * 18 17 16 36 36 H 1.08996 * 117.49965 * 214.98438 * 19 17 16 37 37 H 1.08995 * 117.49643 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 3.4850 -0.7943 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8626 -0.9041 3.6342 16 6 1.3714 -0.2106 4.9064 17 6 1.6850 -1.0888 6.1195 18 6 0.5017 -1.6323 6.9229 19 6 1.3745 -0.5173 7.5045 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7088 1.1611 -3.4845 24 1 3.9186 0.2053 1.1592 25 1 3.8209 -1.3114 2.0860 26 1 3.8030 -1.3529 0.3068 27 1 2.0518 0.9348 2.5280 28 1 0.4722 0.1325 2.3564 29 1 1.3594 -1.8651 3.5273 30 1 2.9390 -1.0628 3.6989 31 1 1.8743 0.7505 5.0136 32 1 0.2950 -0.0522 4.8415 33 1 2.5637 -1.7265 6.0236 34 1 -0.5000 -1.3647 6.5869 35 1 0.6022 -2.6276 7.3558 36 1 2.0487 -0.7795 8.3198 37 1 0.9465 0.4840 7.5513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400716108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:17 Heat of formation + Delta-G solvation = -2.119846 kcal Electronic energy + Delta-G solvation = -14117.954102 eV Core-core repulsion = 11894.975164 eV Total energy + Delta-G solvation = -2222.978938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.23568 -38.22676 -35.18347 -33.30519 -30.97730 -28.47740 -26.61818 -25.36249 -23.20400 -22.51880 -21.37329 -20.84515 -18.34883 -17.11680 -16.62718 -16.21381 -15.61833 -15.33516 -15.15625 -14.79242 -14.16487 -13.68692 -13.29636 -13.02725 -12.88514 -12.71840 -12.55472 -12.47075 -12.30348 -12.05691 -12.03008 -11.95205 -11.78958 -11.33523 -10.99658 -10.82369 -10.66813 -10.50417 -8.92142 -8.10958 -6.23189 1.42756 1.44991 1.52498 2.42813 2.96216 3.16722 3.36506 3.83770 4.06576 4.11170 4.20464 4.30787 4.51376 4.55224 4.70642 4.73314 4.79443 4.83092 4.88267 4.96750 5.02486 5.03711 5.09886 5.11823 5.23701 5.30693 5.32736 5.43090 5.47659 5.54680 5.73574 5.80257 6.26020 6.41286 6.77028 6.91729 7.46078 8.95097 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.069025 B = 0.005463 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.553836 B = 5124.040102 C = 5301.842652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.213 3.787 3 H -0.041 1.041 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.547 5.547 13 C 0.040 3.960 14 C 0.050 3.950 15 C -0.098 4.098 16 C -0.082 4.082 17 C -0.160 4.160 18 C -0.183 4.183 19 C -0.178 4.178 20 H 0.030 0.970 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.002 0.998 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.013 0.987 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.290 -2.987 15.350 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H -0.024 1.024 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.209 1.209 10 H -0.196 1.196 11 H -0.196 1.196 12 N -0.271 5.271 13 C -0.108 4.108 14 C -0.078 4.078 15 C -0.136 4.136 16 C -0.120 4.120 17 C -0.178 4.178 18 C -0.220 4.220 19 C -0.215 4.215 20 H 0.049 0.951 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.021 0.979 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.015 -3.345 15.201 15.598 hybrid contribution 0.491 0.728 -1.115 1.419 sum 1.506 -2.616 14.086 14.406 Atomic orbital electron populations 1.21664 0.97319 0.99220 0.99678 1.19067 0.92719 0.90035 0.87539 1.02388 1.21426 1.31229 1.12357 0.90987 0.92186 1.25753 0.95344 0.95776 1.02004 1.70022 1.37765 1.24259 1.24120 0.85550 0.78721 0.78675 0.78316 1.20913 1.19615 1.19622 1.62091 1.10268 1.52517 1.02271 1.22218 0.87945 0.98701 1.01919 1.22213 1.00117 0.94958 0.90506 1.21456 1.01177 0.98740 0.92181 1.21079 1.00860 0.97896 0.92135 1.22317 1.00368 1.03031 0.92086 1.23111 0.95655 0.98988 1.04250 1.23047 1.03620 0.98581 0.96242 0.95094 0.92166 0.95003 0.92927 0.97927 0.90314 0.92402 0.96845 0.91587 0.91897 0.91784 0.91802 0.92018 0.87739 0.88944 0.88173 0.87877 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.13 8.76 71.98 0.63 -5.50 16 2 C 0.21 11.32 2.06 44.17 0.09 11.41 16 3 H -0.04 -2.45 8.14 -2.38 -0.02 -2.47 16 4 C -0.52 -29.46 7.93 25.60 0.20 -29.25 16 5 H 0.06 3.35 6.39 -2.91 -0.02 3.33 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.87 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.55 -24.31 4.62 -901.47 -4.17 -28.48 16 13 C 0.04 1.63 9.05 127.69 1.16 2.78 16 14 C 0.05 1.85 4.77 86.30 0.41 2.26 16 15 C -0.10 -2.80 5.10 30.59 0.16 -2.65 16 16 C -0.08 -1.92 5.50 30.60 0.17 -1.75 16 17 C -0.16 -3.22 5.73 -10.79 -0.06 -3.28 16 18 C -0.18 -3.29 10.18 30.62 0.31 -2.98 16 19 C -0.18 -3.01 10.26 30.62 0.31 -2.70 16 20 H 0.03 1.38 6.20 -2.39 -0.01 1.36 16 21 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 22 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.08 2.59 6.30 -2.39 -0.02 2.58 16 26 H 0.06 2.48 6.23 -2.39 -0.01 2.47 16 27 H 0.01 0.50 8.12 -2.38 -0.02 0.48 16 28 H 0.07 2.49 5.83 -2.39 -0.01 2.47 16 29 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.06 1.76 6.47 -2.39 -0.02 1.75 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.45 7.87 -2.39 -0.02 1.44 16 33 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 34 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -60.78 290.49 2.94 -57.84 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.01 Total: 8.92 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 3.83 Total: -30.66 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -3.93 Total: -82.35 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.78 2.94 -57.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400716108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.724 kcal (2) G-P(sol) polarization free energy of solvation -60.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds