Wall clock time and date at job start Sun Mar 29 2020 21:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46913 * 2 1 4 4 C 1.50700 * 109.46791 * 240.00936 * 2 1 3 5 5 H 1.08002 * 119.99234 * 239.99920 * 4 2 1 6 6 C 1.37873 * 120.00552 * 59.99877 * 4 2 1 7 7 N 1.31516 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00308 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47342 * 59.99678 * 8 6 4 10 10 H 1.48494 * 109.47510 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47156 * 299.99888 * 8 6 4 12 12 N 1.46891 * 109.47302 * 120.00574 * 2 1 3 13 13 C 1.46899 * 111.00105 * 274.99790 * 12 2 1 14 14 C 1.50693 * 109.47479 * 180.02562 * 13 12 2 15 15 C 1.35144 * 127.24907 * 89.70172 * 14 13 12 16 16 C 1.37812 * 114.75987 * 180.26620 * 15 14 13 17 17 N 1.30078 * 116.88265 * 0.02562 * 16 15 14 18 18 S 1.69604 * 107.15374 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.46846 * 299.99887 * 1 2 3 20 20 H 1.09003 * 109.47475 * 59.99312 * 1 2 3 21 21 H 1.08995 * 109.47360 * 179.97438 * 1 2 3 22 22 H 0.97000 * 120.00003 * 180.02562 * 7 6 4 23 23 H 1.00899 * 110.99807 * 151.04522 * 12 2 1 24 24 H 1.09000 * 109.47259 * 59.99762 * 13 12 2 25 25 H 1.09000 * 109.47529 * 300.00284 * 13 12 2 26 26 H 1.07992 * 122.61919 * 0.25279 * 15 14 13 27 27 H 1.07999 * 121.56089 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3212 -1.1199 -4.0081 9 1 1.8257 -2.5198 -4.0081 10 1 1.8258 -0.4201 -5.2205 11 1 3.8062 -1.1205 -4.0084 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 2.5886 -0.5217 3.5555 15 6 3.8739 -0.6702 3.9458 16 6 4.0462 -1.4102 5.0956 17 7 2.9716 -1.8735 5.6634 18 16 1.6523 -1.3680 4.7250 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 0.7080 1.1612 -3.4843 23 1 2.9173 -1.1205 1.0285 24 1 1.0872 0.6161 2.5525 25 1 2.7589 1.0461 2.1182 26 1 4.7014 -0.2425 3.3993 27 1 5.0276 -1.5968 5.5059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404328288.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:57 Heat of formation + Delta-G solvation = 34.976081 kcal Electronic energy + Delta-G solvation = -11607.941346 eV Core-core repulsion = 9492.231779 eV Total energy + Delta-G solvation = -2115.709567 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.63215 -36.10227 -33.09982 -31.14417 -28.43277 -25.84806 -25.03519 -22.96256 -19.91601 -19.60684 -17.73071 -16.49573 -15.40819 -14.93842 -14.32803 -14.10394 -13.46807 -13.31129 -12.93819 -12.33680 -12.03339 -11.25440 -11.03634 -10.91363 -10.83453 -10.34663 -10.28139 -10.20840 -10.13146 -9.30747 -8.90698 -8.55579 -8.53039 -7.45113 -6.08732 -4.15780 0.89912 1.71971 2.09839 2.63703 3.27932 3.32692 3.35485 4.35342 4.74454 5.22059 5.23739 5.33074 5.43157 5.70835 5.95532 6.02978 6.15958 6.72903 6.78618 7.05114 7.12581 7.38044 7.70489 7.79586 8.18025 8.25094 8.52654 8.92653 9.50446 10.97543 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058691 B = 0.006617 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.962448 B = 4230.339376 C = 4462.458355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.127 3.873 14 C -0.136 4.136 15 C -0.221 4.221 16 C 0.090 3.910 17 N -0.479 5.479 18 S 0.265 5.735 19 H 0.005 0.995 20 H 0.082 0.918 21 H 0.033 0.967 22 H 0.262 0.738 23 H 0.335 0.665 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.153 0.847 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.834 -0.906 10.638 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.313 5.313 13 C -0.005 4.005 14 C -0.267 4.267 15 C -0.257 4.257 16 C -0.107 4.107 17 N -0.300 5.300 18 S 0.416 5.584 19 H 0.024 0.976 20 H 0.101 0.899 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.152 0.848 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.171 0.829 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.515 -1.951 11.864 12.119 hybrid contribution 2.683 0.819 -2.048 3.473 sum 4.198 -1.132 9.816 10.736 Atomic orbital electron populations 1.21740 0.97642 0.99574 0.99504 1.19157 0.92785 0.92433 0.85136 0.97835 1.21183 1.31793 1.12656 0.90313 0.92192 1.24908 0.94955 0.94966 0.99064 1.69880 1.36371 1.22812 1.23722 0.86553 0.79068 0.79805 0.81940 1.20144 1.21260 1.20298 1.60845 1.32515 1.32449 1.05536 1.20397 1.00263 0.92887 0.86932 1.25722 0.97509 1.01502 1.01966 1.21331 0.97701 1.06712 0.99935 1.22734 0.98744 0.95435 0.93828 1.76707 1.01483 1.25734 1.26083 1.84051 1.16285 1.44337 1.13752 0.97641 0.89901 0.94777 0.92765 0.84764 0.89997 0.93630 0.82944 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 37.16 0.34 -2.72 15 2 C 0.21 5.19 2.60 -68.87 -0.18 5.02 15 3 H 0.00 0.11 7.80 -51.92 -0.40 -0.30 15 4 C -0.52 -13.94 8.59 -34.44 -0.30 -14.24 15 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 15 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 12 N -0.68 -14.04 6.29 -109.23 -0.69 -14.73 15 13 C 0.13 2.17 6.06 -4.98 -0.03 2.14 15 14 C -0.14 -2.07 6.11 -35.41 -0.22 -2.29 15 15 C -0.22 -2.94 10.17 -40.84 -0.42 -3.36 15 16 C 0.09 1.13 11.27 -18.45 -0.21 0.93 15 17 N -0.48 -7.10 12.09 28.86 0.35 -6.75 15 18 S 0.26 3.93 23.72 -107.50 -2.55 1.38 15 19 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 15 20 H 0.08 2.19 6.07 -51.93 -0.32 1.87 15 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 23 H 0.33 6.79 8.22 -39.29 -0.32 6.46 15 24 H 0.08 1.40 7.44 -51.93 -0.39 1.02 15 25 H 0.05 0.77 8.06 -51.93 -0.42 0.35 15 26 H 0.15 1.75 8.06 -52.49 -0.42 1.32 15 27 H 0.18 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 248.79 15.07 3.75 3.75 Total: -1.00 -28.30 248.79 -7.67 -35.96 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -3.04 Total: 1.67 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.10 Total: -12.91 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.29 Total: -45.72 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.55 Total: 1.38 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.30 -7.67 -35.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404328288.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.940 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds