Wall clock time and date at job start Sun Mar 29 2020 21:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46913 * 2 1 4 4 C 1.50700 * 109.46791 * 240.00936 * 2 1 3 5 5 H 1.08002 * 119.99234 * 239.99920 * 4 2 1 6 6 C 1.37873 * 120.00552 * 59.99877 * 4 2 1 7 7 N 1.31516 * 119.99837 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00308 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47342 * 59.99678 * 8 6 4 10 10 H 1.48494 * 109.47510 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47156 * 299.99888 * 8 6 4 12 12 N 1.46891 * 109.47302 * 120.00574 * 2 1 3 13 13 C 1.46899 * 111.00105 * 274.99790 * 12 2 1 14 14 C 1.50693 * 109.47479 * 180.02562 * 13 12 2 15 15 C 1.35144 * 127.24907 * 89.70172 * 14 13 12 16 16 C 1.37812 * 114.75987 * 180.26620 * 15 14 13 17 17 N 1.30078 * 116.88265 * 0.02562 * 16 15 14 18 18 S 1.69604 * 107.15374 * 359.97438 * 17 16 15 19 19 H 1.09002 * 109.46846 * 299.99887 * 1 2 3 20 20 H 1.09003 * 109.47475 * 59.99312 * 1 2 3 21 21 H 1.08995 * 109.47360 * 179.97438 * 1 2 3 22 22 H 0.97000 * 120.00003 * 180.02562 * 7 6 4 23 23 H 1.00899 * 110.99807 * 151.04522 * 12 2 1 24 24 H 1.09000 * 109.47259 * 59.99762 * 13 12 2 25 25 H 1.09000 * 109.47529 * 300.00284 * 13 12 2 26 26 H 1.07992 * 122.61919 * 0.25279 * 15 14 13 27 27 H 1.07999 * 121.56089 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3212 -1.1199 -4.0081 9 1 1.8257 -2.5198 -4.0081 10 1 1.8258 -0.4201 -5.2205 11 1 3.8062 -1.1205 -4.0084 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 2.5886 -0.5217 3.5555 15 6 3.8739 -0.6702 3.9458 16 6 4.0462 -1.4102 5.0956 17 7 2.9716 -1.8735 5.6634 18 16 1.6523 -1.3680 4.7250 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 0.7080 1.1612 -3.4843 23 1 2.9173 -1.1205 1.0285 24 1 1.0872 0.6161 2.5525 25 1 2.7589 1.0461 2.1182 26 1 4.7014 -0.2425 3.3993 27 1 5.0276 -1.5968 5.5059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404328288.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:57 Heat of formation + Delta-G solvation = 16.304865 kcal Electronic energy + Delta-G solvation = -11608.750990 eV Core-core repulsion = 9492.231779 eV Total energy + Delta-G solvation = -2116.519212 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.74409 -37.78975 -34.88280 -32.69612 -30.06555 -27.54020 -26.74401 -24.23113 -21.79768 -20.72627 -19.10659 -18.22605 -16.93057 -16.47307 -15.84317 -15.68051 -14.96591 -14.67935 -14.18878 -13.95947 -13.59565 -13.06406 -12.74730 -12.72585 -12.44608 -12.20637 -11.97995 -11.93032 -11.36760 -10.94164 -10.59060 -10.45969 -9.65177 -9.14278 -8.13436 -6.27461 -0.22293 0.58658 1.01349 1.44039 1.45851 1.53136 1.61188 2.42225 3.15762 3.50203 3.85486 4.11041 4.34483 4.50218 4.63609 4.82466 4.96264 5.03746 5.07844 5.19642 5.44469 5.65345 5.69487 5.84093 6.21494 6.40168 6.69780 6.94980 7.42842 8.91961 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.058691 B = 0.006617 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.962448 B = 4230.339376 C = 4462.458355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.021 1.021 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.681 5.681 13 C 0.133 3.867 14 C -0.156 4.156 15 C -0.208 4.208 16 C 0.098 3.902 17 N -0.495 5.495 18 S 0.244 5.756 19 H 0.024 0.976 20 H 0.059 0.941 21 H 0.026 0.974 22 H 0.263 0.737 23 H 0.337 0.663 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.175 0.825 27 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -1.510 11.116 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H -0.003 1.003 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.313 5.313 13 C 0.002 3.998 14 C -0.286 4.286 15 C -0.243 4.243 16 C -0.099 4.099 17 N -0.315 5.315 18 S 0.396 5.604 19 H 0.043 0.957 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.154 0.846 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.192 0.808 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.932 -2.562 12.365 12.964 hybrid contribution 2.302 1.016 -2.110 3.284 sum 5.235 -1.546 10.255 11.617 Atomic orbital electron populations 1.21579 0.97675 0.98941 0.99289 1.18944 0.92761 0.91164 0.86300 1.00323 1.21523 1.31898 1.12788 0.91504 0.92244 1.25690 0.95126 0.95634 1.01942 1.70004 1.37250 1.23979 1.24307 0.85559 0.78798 0.78571 0.78372 1.19885 1.21017 1.19455 1.60702 1.32711 1.32896 1.05013 1.20269 1.00465 0.92658 0.86439 1.25491 0.98523 1.02818 1.01817 1.21655 0.97451 1.05442 0.99761 1.23319 0.99793 0.93779 0.93017 1.76784 1.01949 1.26379 1.26433 1.84079 1.17130 1.45005 1.14198 0.95678 0.92263 0.95436 0.92775 0.84554 0.90359 0.93153 0.80790 0.76489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 9.19 71.98 0.66 -5.02 15 2 C 0.22 10.66 2.60 44.17 0.11 10.77 15 3 H -0.02 -1.11 7.80 -2.38 -0.02 -1.13 15 4 C -0.54 -28.81 8.59 25.60 0.22 -28.59 15 5 H 0.06 3.11 7.62 -2.91 -0.02 3.09 15 6 C 0.02 0.84 5.30 84.65 0.45 1.29 15 7 N -0.92 -51.63 11.32 21.45 0.24 -51.38 15 8 Si 0.96 42.56 29.54 68.60 2.03 44.58 15 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 15 11 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 12 N -0.68 -27.73 6.29 -499.48 -3.14 -30.87 15 13 C 0.13 4.44 6.06 85.56 0.52 4.96 15 14 C -0.16 -4.50 6.11 24.97 0.15 -4.35 15 15 C -0.21 -4.92 10.17 21.46 0.22 -4.70 15 16 C 0.10 2.15 11.27 84.85 0.96 3.11 15 17 N -0.49 -13.60 12.09 -62.60 -0.76 -14.36 15 18 S 0.24 7.00 23.72 -56.49 -1.34 5.66 15 19 H 0.02 1.07 7.45 -2.39 -0.02 1.05 15 20 H 0.06 3.17 6.07 -2.39 -0.01 3.16 15 21 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 23 H 0.34 13.37 8.22 -89.69 -0.74 12.63 15 24 H 0.08 2.65 7.44 -2.39 -0.02 2.64 15 25 H 0.05 1.64 8.06 -2.39 -0.02 1.63 15 26 H 0.17 3.35 8.06 -2.91 -0.02 3.32 15 27 H 0.22 2.86 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -59.48 248.79 0.76 -58.72 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.44 Total: 10.18 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 3.29 Total: -22.53 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.66 Total: -96.61 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -1.34 Total: 5.66 kcal Total: -59.48 0.76 -58.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404328288.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.029 kcal (2) G-P(sol) polarization free energy of solvation -59.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds