Wall clock time and date at job start Sun Mar 29 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 2 15 15 C 1.35139 * 127.25020 * 89.70950 * 14 13 12 16 16 C 1.37805 * 114.76601 * 179.86540 * 15 14 13 17 17 N 1.30082 * 116.87577 * 0.44552 * 16 15 14 18 18 S 1.69605 * 107.15375 * 359.76230 * 17 16 15 19 19 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 20 20 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 21 21 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 22 22 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 23 23 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 24 24 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 25 25 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 26 26 H 1.08011 * 122.61675 * 0.03505 * 15 14 13 27 27 H 1.07995 * 121.56316 * 180.20349 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5873 -0.5216 -3.5560 15 6 1.8513 -1.1897 -4.4716 16 6 2.5815 -1.7787 -5.4810 17 7 3.8735 -1.6347 -5.4331 18 16 4.2227 -0.7062 -4.0574 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7088 1.1613 3.4845 23 1 2.9173 -1.1204 -1.0288 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0463 -2.1182 26 1 0.7745 -1.2545 -4.4180 27 1 2.1040 -2.3371 -6.2724 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404328289.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:59 Heat of formation + Delta-G solvation = 16.744907 kcal Electronic energy + Delta-G solvation = -11608.572764 eV Core-core repulsion = 9492.072634 eV Total energy + Delta-G solvation = -2116.500130 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73490 -37.80434 -34.88557 -32.69682 -30.10733 -27.49659 -26.73328 -24.23476 -21.79311 -20.85396 -18.91787 -18.30563 -16.98780 -16.48243 -15.88045 -15.68555 -14.90704 -14.68669 -14.12128 -13.93913 -13.60510 -13.16059 -12.85405 -12.72958 -12.30717 -12.22659 -12.09140 -11.82610 -11.40248 -10.94812 -10.59454 -10.46116 -9.67413 -9.16189 -8.13992 -6.28016 -0.23488 0.54420 0.96903 1.43782 1.45084 1.52652 1.62406 2.41829 3.15116 3.52013 3.77945 4.16053 4.35221 4.47716 4.63680 4.83817 5.01430 5.06167 5.08950 5.19829 5.45335 5.64742 5.69115 5.84098 6.21715 6.37739 6.67753 6.92747 7.42228 8.91308 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.055625 B = 0.006712 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.248543 B = 4170.446296 C = 4428.552740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.023 1.023 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.678 5.678 13 C 0.133 3.867 14 C -0.158 4.158 15 C -0.194 4.194 16 C 0.099 3.901 17 N -0.490 5.490 18 S 0.225 5.775 19 H 0.058 0.942 20 H 0.027 0.973 21 H 0.028 0.972 22 H 0.263 0.737 23 H 0.332 0.668 24 H 0.093 0.907 25 H 0.036 0.964 26 H 0.175 0.825 27 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -2.396 -12.065 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 H -0.005 1.005 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.310 5.310 13 C 0.002 3.998 14 C -0.288 4.288 15 C -0.229 4.229 16 C -0.098 4.098 17 N -0.310 5.310 18 S 0.376 5.624 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.149 0.851 24 H 0.111 0.889 25 H 0.054 0.946 26 H 0.192 0.808 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.224 -2.464 -12.320 12.971 hybrid contribution -0.929 0.172 1.257 1.573 sum 2.296 -2.292 -11.062 11.528 Atomic orbital electron populations 1.21552 0.97275 0.99042 0.99393 1.18966 0.93054 0.91032 0.86248 1.00540 1.21528 1.31947 1.12817 0.91602 0.92390 1.25680 0.95108 0.95630 1.01896 1.70000 1.37244 1.23888 1.24319 0.85573 0.78732 0.78665 0.78423 1.19648 1.20900 1.19748 1.60740 1.32372 1.32814 1.05060 1.20307 1.00776 0.92252 0.86459 1.25487 0.99289 1.03009 1.01003 1.21625 1.04468 1.01647 0.95179 1.23378 0.88853 0.97864 0.99737 1.76816 1.18948 1.19989 1.15292 1.84079 1.09213 1.48786 1.20295 0.92364 0.95359 0.95286 0.92745 0.85053 0.88923 0.94599 0.80764 0.76328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.48 9.19 71.98 0.66 -4.82 15 2 C 0.22 10.63 2.60 44.16 0.11 10.74 15 3 H -0.02 -1.24 7.80 -2.39 -0.02 -1.26 15 4 C -0.54 -29.16 8.59 25.60 0.22 -28.94 15 5 H 0.06 3.08 7.62 -2.91 -0.02 3.05 15 6 C 0.02 0.90 5.30 84.66 0.45 1.34 15 7 N -0.92 -51.66 11.32 21.45 0.24 -51.42 15 8 Si 0.96 42.82 29.54 68.60 2.03 44.85 15 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 12 N -0.68 -27.78 6.29 -499.48 -3.14 -30.93 15 13 C 0.13 4.48 6.06 85.55 0.52 5.00 15 14 C -0.16 -4.56 6.11 24.97 0.15 -4.41 15 15 C -0.19 -4.69 10.17 21.45 0.22 -4.47 15 16 C 0.10 2.18 11.27 84.85 0.96 3.13 15 17 N -0.49 -13.39 12.09 -62.59 -0.76 -14.15 15 18 S 0.22 6.34 23.72 -56.49 -1.34 5.00 15 19 H 0.06 3.08 6.07 -2.38 -0.01 3.07 15 20 H 0.03 1.17 7.45 -2.39 -0.02 1.16 15 21 H 0.03 1.36 8.14 -2.39 -0.02 1.35 15 22 H 0.26 14.15 8.31 -92.71 -0.77 13.38 15 23 H 0.33 13.65 8.22 -89.69 -0.74 12.91 15 24 H 0.09 3.00 7.44 -2.39 -0.02 2.99 15 25 H 0.04 1.23 8.05 -2.39 -0.02 1.21 15 26 H 0.18 3.54 8.06 -2.91 -0.02 3.52 15 27 H 0.22 2.88 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -59.53 248.79 0.76 -58.77 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.44 Total: 10.29 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.29 Total: -22.42 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -3.66 Total: -96.49 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.34 Total: 5.00 kcal Total: -59.53 0.76 -58.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404328289.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.514 kcal (2) G-P(sol) polarization free energy of solvation -59.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds