Wall clock time and date at job start Sun Mar 29 2020 21:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37809 * 121.55863 * 2 1 4 4 C 1.35142 * 114.76021 * 179.97438 * 3 2 1 5 5 C 1.50696 * 127.24936 * 180.26340 * 4 3 2 6 6 N 1.46499 * 109.47229 * 89.71164 * 5 4 3 7 7 C 1.46504 * 119.99477 * 270.00051 * 6 5 4 8 8 C 1.36930 * 120.00117 * 89.99652 * 6 5 4 9 9 H 1.07996 * 120.00158 * 22.37321 * 8 6 5 10 10 C 1.38818 * 120.00064 * 202.37101 * 8 6 5 11 11 N 1.31616 * 119.99718 * 11.34816 * 10 8 6 12 12 Si 1.86798 * 120.00104 * 191.34937 * 10 8 6 13 13 H 1.48501 * 109.47037 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47135 * 119.99795 * 12 10 8 15 15 H 1.48496 * 109.47138 * 239.99858 * 12 10 8 16 16 S 1.72052 * 105.50121 * 0.02562 * 4 3 2 17 17 N 1.30079 * 121.55684 * 179.97438 * 2 1 3 18 18 H 1.08993 * 109.47029 * 269.97428 * 1 2 3 19 19 H 1.08998 * 109.46780 * 29.97520 * 1 2 3 20 20 H 1.08998 * 109.47042 * 149.97397 * 1 2 3 21 21 H 1.07995 * 122.62270 * 0.02562 * 3 2 1 22 22 H 1.08999 * 109.47072 * 209.70869 * 5 4 3 23 23 H 1.09001 * 109.47197 * 329.71055 * 5 4 3 24 24 H 1.09000 * 109.47187 * 94.19569 * 7 6 5 25 25 H 1.08999 * 109.46603 * 214.18897 * 7 6 5 26 26 H 1.08990 * 109.47322 * 334.19593 * 7 6 5 27 27 H 0.97004 * 119.99799 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 0.0005 5 6 4.6179 2.0974 0.0062 6 7 4.9512 2.4473 1.3892 7 6 4.2058 3.5044 2.0772 8 6 5.9592 1.7863 2.0388 9 1 6.7311 1.2874 1.4717 10 6 5.9891 1.7575 3.4264 11 7 4.9446 2.1654 4.1156 12 14 7.5114 1.1397 4.3152 13 1 8.5391 0.7428 3.3195 14 1 8.0518 2.2191 5.1801 15 1 7.1539 -0.0333 5.1527 16 16 3.8306 -0.6864 0.0003 17 7 2.1878 -1.1084 0.0005 18 1 -0.3633 -0.0005 1.0276 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8897 -0.5142 21 1 1.7580 2.1464 0.0004 22 1 5.5126 1.7402 -0.5038 23 1 4.2332 2.9778 -0.5087 24 1 3.3894 3.0611 2.6475 25 1 4.8734 4.0383 2.7536 26 1 3.8002 4.1999 1.3427 27 1 4.9653 2.1450 5.0852 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404427093.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:31 Heat of formation + Delta-G solvation = 55.801847 kcal Electronic energy + Delta-G solvation = -11978.312674 eV Core-core repulsion = 9863.506180 eV Total energy + Delta-G solvation = -2114.806494 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.41229 -35.79235 -32.22003 -30.28404 -29.13010 -26.55107 -25.79172 -22.23865 -20.64421 -18.83314 -17.11936 -16.79212 -15.05520 -14.48153 -14.16853 -13.60887 -13.41361 -13.08034 -12.38678 -12.29086 -11.92455 -11.66875 -11.31647 -10.97650 -10.91311 -10.63261 -10.18724 -10.08582 -9.97195 -9.74903 -8.71648 -8.68855 -7.88235 -6.98475 -5.89521 -3.32363 1.47576 2.33166 2.64568 3.11541 3.31977 3.38847 3.40958 4.39262 5.13385 5.32330 5.50926 5.57443 5.70766 5.77583 5.95469 5.98700 6.14431 6.35020 6.59091 6.66136 6.72927 7.25712 7.35577 7.60945 7.68567 8.21298 9.05274 9.65800 10.14030 11.14216 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.038616 B = 0.009914 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.911487 B = 2823.487805 C = 3008.408238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.115 3.885 3 C -0.235 4.235 4 C -0.141 4.141 5 C 0.208 3.792 6 N -0.580 5.580 7 C 0.160 3.840 8 C -0.258 4.258 9 H 0.075 0.925 10 C 0.007 3.993 11 N -0.897 5.897 12 Si 0.909 3.091 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.288 1.288 16 S 0.235 5.765 17 N -0.497 5.497 18 H 0.075 0.925 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.142 0.858 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.002 0.998 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 -0.196 -7.523 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.270 4.270 4 C -0.275 4.275 5 C 0.078 3.922 6 N -0.300 5.300 7 C 0.016 3.984 8 C -0.388 4.388 9 H 0.093 0.907 10 C -0.193 4.193 11 N -0.540 5.540 12 Si 0.738 3.262 13 H -0.199 1.199 14 H -0.214 1.214 15 H -0.214 1.214 16 S 0.388 5.612 17 N -0.320 5.320 18 H 0.094 0.906 19 H 0.093 0.907 20 H 0.089 0.911 21 H 0.160 0.840 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.654 -2.172 -7.309 8.455 hybrid contribution -0.308 1.223 0.905 1.552 sum -3.963 -0.949 -6.404 7.590 Atomic orbital electron populations 1.20445 0.87813 1.02821 1.02898 1.21314 0.98216 0.88936 0.97757 1.20836 0.92798 0.99688 1.13662 1.27210 0.99904 1.01593 0.98811 1.19665 0.92278 0.91353 0.88895 1.44370 1.37356 1.37910 1.10334 1.20899 0.95987 0.88289 0.93256 1.19369 0.99981 1.30306 0.89148 0.90716 1.25155 0.97550 0.99665 0.96946 1.70087 1.27824 1.49960 1.06128 0.86112 0.82159 0.78228 0.79697 1.19922 1.21361 1.21431 1.83808 1.10095 0.99251 1.68069 1.76489 1.00952 1.26655 1.27939 0.90602 0.90726 0.91126 0.84029 0.91917 0.91772 0.95112 0.93020 0.97985 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.27 36.01 0.37 -0.68 15 2 C 0.11 2.09 6.72 -83.49 -0.56 1.53 15 3 C -0.23 -4.41 9.91 -40.84 -0.40 -4.81 15 4 C -0.14 -2.85 6.18 -35.41 -0.22 -3.07 15 5 C 0.21 4.19 6.28 -5.20 -0.03 4.16 15 6 N -0.58 -14.15 2.91 -182.51 -0.53 -14.68 15 7 C 0.16 3.83 9.01 59.85 0.54 4.36 15 8 C -0.26 -6.85 9.67 -15.06 -0.15 -7.00 15 9 H 0.08 1.94 7.84 -52.49 -0.41 1.53 15 10 C 0.01 0.19 5.13 -17.43 -0.09 0.10 15 11 N -0.90 -25.65 10.59 55.49 0.59 -25.07 15 12 Si 0.91 21.46 29.57 -169.99 -5.03 16.43 15 13 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 16 S 0.23 4.75 23.72 -107.50 -2.55 2.21 15 17 N -0.50 -10.06 12.05 32.03 0.39 -9.67 15 18 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 19 H 0.07 0.82 8.11 -51.93 -0.42 0.40 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 21 H 0.14 2.37 8.06 -52.49 -0.42 1.95 15 22 H 0.06 1.20 8.03 -51.93 -0.42 0.78 15 23 H 0.06 1.13 7.86 -51.93 -0.41 0.73 15 24 H 0.03 0.81 7.42 -51.93 -0.39 0.42 15 25 H 0.05 1.32 7.19 -51.93 -0.37 0.94 15 26 H 0.00 0.03 7.84 -51.93 -0.41 -0.37 15 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -29.92 250.27 -7.13 -37.05 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -3.23 Total: -4.63 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.54 Total: -5.41 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.44 Total: -49.42 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.55 Total: 2.21 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.92 -7.13 -37.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404427093.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.849 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds