Wall clock time and date at job start Sun Mar 29 2020 21:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37809 * 121.55863 * 2 1 4 4 C 1.35142 * 114.76021 * 179.97438 * 3 2 1 5 5 C 1.50696 * 127.24936 * 180.26340 * 4 3 2 6 6 N 1.46499 * 109.47229 * 89.71164 * 5 4 3 7 7 C 1.46504 * 119.99477 * 270.00051 * 6 5 4 8 8 C 1.36930 * 120.00117 * 89.99652 * 6 5 4 9 9 H 1.07996 * 120.00158 * 22.37321 * 8 6 5 10 10 C 1.38818 * 120.00064 * 202.37101 * 8 6 5 11 11 N 1.31616 * 119.99718 * 11.34816 * 10 8 6 12 12 Si 1.86798 * 120.00104 * 191.34937 * 10 8 6 13 13 H 1.48501 * 109.47037 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47135 * 119.99795 * 12 10 8 15 15 H 1.48496 * 109.47138 * 239.99858 * 12 10 8 16 16 S 1.72052 * 105.50121 * 0.02562 * 4 3 2 17 17 N 1.30079 * 121.55684 * 179.97438 * 2 1 3 18 18 H 1.08993 * 109.47029 * 269.97428 * 1 2 3 19 19 H 1.08998 * 109.46780 * 29.97520 * 1 2 3 20 20 H 1.08998 * 109.47042 * 149.97397 * 1 2 3 21 21 H 1.07995 * 122.62270 * 0.02562 * 3 2 1 22 22 H 1.08999 * 109.47072 * 209.70869 * 5 4 3 23 23 H 1.09001 * 109.47197 * 329.71055 * 5 4 3 24 24 H 1.09000 * 109.47187 * 94.19569 * 7 6 5 25 25 H 1.08999 * 109.46603 * 214.18897 * 7 6 5 26 26 H 1.08990 * 109.47322 * 334.19593 * 7 6 5 27 27 H 0.97004 * 119.99799 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2283 1.1743 0.0000 4 6 3.5702 1.0143 0.0005 5 6 4.6179 2.0974 0.0062 6 7 4.9512 2.4473 1.3892 7 6 4.2058 3.5044 2.0772 8 6 5.9592 1.7863 2.0388 9 1 6.7311 1.2874 1.4717 10 6 5.9891 1.7575 3.4264 11 7 4.9446 2.1654 4.1156 12 14 7.5114 1.1397 4.3152 13 1 8.5391 0.7428 3.3195 14 1 8.0518 2.2191 5.1801 15 1 7.1539 -0.0333 5.1527 16 16 3.8306 -0.6864 0.0003 17 7 2.1878 -1.1084 0.0005 18 1 -0.3633 -0.0005 1.0276 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8897 -0.5142 21 1 1.7580 2.1464 0.0004 22 1 5.5126 1.7402 -0.5038 23 1 4.2332 2.9778 -0.5087 24 1 3.3894 3.0611 2.6475 25 1 4.8734 4.0383 2.7536 26 1 3.8002 4.1999 1.3427 27 1 4.9653 2.1450 5.0852 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404427093.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:30 Heat of formation + Delta-G solvation = 37.643216 kcal Electronic energy + Delta-G solvation = -11979.100092 eV Core-core repulsion = 9863.506180 eV Total energy + Delta-G solvation = -2115.593911 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.91254 -37.59466 -34.01431 -32.01737 -30.38652 -28.27667 -27.67409 -23.96227 -22.27843 -20.31905 -18.78133 -18.64149 -16.93422 -15.99573 -15.74859 -15.36342 -15.07491 -14.65214 -13.87643 -13.79518 -13.20177 -13.16077 -12.94972 -12.83680 -12.68667 -12.44355 -12.05781 -11.97219 -11.59467 -11.28073 -10.71805 -10.28574 -9.41801 -8.93040 -7.90000 -5.37205 -0.05432 0.77844 1.12724 1.44395 1.46486 1.55985 1.66330 2.47816 3.27226 3.71092 3.80464 4.27968 4.46036 4.47800 4.56873 4.76664 4.81119 4.84044 5.00246 5.13395 5.31853 5.34916 5.59819 5.71137 5.89399 6.25346 7.07846 7.76088 8.18762 9.12821 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.038616 B = 0.009914 C = 0.009305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.911487 B = 2823.487805 C = 3008.408238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.113 3.887 3 C -0.227 4.227 4 C -0.153 4.153 5 C 0.208 3.792 6 N -0.599 5.599 7 C 0.175 3.825 8 C -0.261 4.261 9 H 0.076 0.924 10 C -0.047 4.047 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.296 1.296 16 S 0.204 5.796 17 N -0.513 5.513 18 H 0.084 0.916 19 H 0.105 0.895 20 H 0.080 0.920 21 H 0.168 0.832 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.001 0.999 25 H 0.024 0.976 26 H 0.040 0.960 27 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.498 0.088 -8.828 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.262 4.262 4 C -0.287 4.287 5 C 0.080 3.920 6 N -0.320 5.320 7 C 0.030 3.970 8 C -0.392 4.392 9 H 0.093 0.907 10 C -0.243 4.243 11 N -0.578 5.578 12 Si 0.793 3.207 13 H -0.186 1.186 14 H -0.214 1.214 15 H -0.223 1.223 16 S 0.357 5.643 17 N -0.335 5.335 18 H 0.102 0.898 19 H 0.124 0.876 20 H 0.099 0.901 21 H 0.185 0.815 22 H 0.088 0.912 23 H 0.113 0.887 24 H 0.019 0.981 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.597 -1.906 -8.656 9.985 hybrid contribution -0.161 1.110 1.112 1.580 sum -4.758 -0.796 -7.544 8.954 Atomic orbital electron populations 1.20639 0.84163 1.04979 1.04029 1.22072 1.00586 0.88140 0.95666 1.21256 0.92356 1.01090 1.11469 1.27172 1.00615 1.01282 0.99611 1.19771 0.92854 0.92581 0.86820 1.44411 1.37759 1.38528 1.11262 1.20634 0.94331 0.88463 0.93558 1.19598 1.00923 1.29259 0.89410 0.90667 1.25812 0.99873 1.00796 0.97806 1.70239 1.29482 1.52436 1.05667 0.85238 0.79723 0.77172 0.78611 1.18634 1.21435 1.22346 1.83859 1.11273 1.00152 1.68996 1.76585 1.00548 1.27696 1.28707 0.89759 0.87593 0.90067 0.81451 0.91221 0.88662 0.98099 0.95739 0.94170 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 10.27 71.24 0.73 -1.04 15 2 C 0.11 3.80 6.72 42.72 0.29 4.09 15 3 C -0.23 -7.83 9.91 21.45 0.21 -7.62 15 4 C -0.15 -5.91 6.18 24.97 0.15 -5.75 15 5 C 0.21 7.94 6.28 85.63 0.54 8.48 15 6 N -0.60 -28.62 2.91 -731.33 -2.13 -30.75 15 7 C 0.17 8.24 9.01 127.77 1.15 9.39 15 8 C -0.26 -13.86 9.67 84.04 0.81 -13.05 15 9 H 0.08 3.88 7.84 -2.91 -0.02 3.86 15 10 C -0.05 -2.58 5.13 84.86 0.44 -2.15 15 11 N -0.93 -54.46 10.59 21.65 0.23 -54.23 15 12 Si 0.96 44.63 29.57 68.60 2.03 46.66 15 13 H -0.26 -11.43 7.11 99.48 0.71 -10.72 15 14 H -0.29 -13.19 7.11 99.48 0.71 -12.49 15 15 H -0.30 -13.98 7.11 99.48 0.71 -13.27 15 16 S 0.20 8.09 23.72 -56.49 -1.34 6.75 15 17 N -0.51 -19.92 12.05 -52.59 -0.63 -20.55 15 18 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 19 H 0.11 1.80 8.11 -2.39 -0.02 1.78 15 20 H 0.08 1.72 8.14 -2.39 -0.02 1.71 15 21 H 0.17 4.88 8.06 -2.91 -0.02 4.85 15 22 H 0.07 2.54 8.03 -2.39 -0.02 2.52 15 23 H 0.10 3.02 7.86 -2.39 -0.02 3.00 15 24 H 0.00 0.03 7.42 -2.39 -0.02 0.02 15 25 H 0.02 1.24 7.19 -2.39 -0.02 1.23 15 26 H 0.04 1.54 7.84 -2.39 -0.02 1.52 15 27 H 0.25 14.17 8.31 -92.70 -0.77 13.40 15 Total: -1.00 -64.14 250.27 3.63 -60.51 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: 1.15 Total: -0.75 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.32 Total: -7.64 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -2.53 Total: -105.53 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 8.09 SS G_CDS: -1.34 Total: 6.75 kcal Total: -64.14 3.63 -60.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404427093.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.149 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds