Wall clock time and date at job start Sun Mar 29 2020 21:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48508 * 109.46705 * 154.98442 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47257 * 179.97438 * 12 11 9 14 14 C 1.35141 * 127.25261 * 89.69730 * 13 12 11 15 15 C 1.37808 * 114.76326 * 179.86536 * 14 13 12 16 16 N 1.30083 * 116.88009 * 0.45444 * 15 14 13 17 17 S 1.69599 * 107.15142 * 359.75830 * 16 15 14 18 18 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 19 19 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 20 20 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 21 21 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 22 22 H 1.08001 * 122.61637 * 0.04921 * 14 13 12 23 23 H 1.08002 * 121.55996 * 180.21061 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2199 -6.0331 -0.5182 14 6 2.7576 -6.7602 0.4860 15 6 3.6339 -7.7438 0.0813 16 7 3.8468 -7.8522 -1.1974 17 16 2.9025 -6.6699 -1.9635 18 1 -0.4850 0.8400 0.0004 19 1 2.9311 -3.6293 -0.2590 20 1 0.6073 -5.0546 0.4804 21 1 0.6098 -4.8644 -1.2894 22 1 2.5170 -6.5861 1.5244 23 1 4.1242 -8.3917 0.7929 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404432979.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:57 Heat of formation + Delta-G solvation = -3.117055 kcal Electronic energy + Delta-G solvation = -11275.079906 eV Core-core repulsion = 9021.885402 eV Total energy + Delta-G solvation = -2253.194504 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.77138 -37.29706 -33.93229 -32.45120 -30.80007 -27.32622 -25.60838 -23.32633 -19.95379 -19.68981 -17.94974 -17.05638 -15.59517 -15.33332 -14.56566 -14.10360 -13.88621 -13.67704 -12.92407 -12.57424 -12.12318 -11.74654 -11.22593 -11.10637 -10.78577 -10.52184 -10.38690 -10.27116 -9.55144 -8.90113 -8.66735 -7.70430 -7.67002 -6.25713 -4.70296 0.75181 1.58731 1.97648 2.53311 3.11579 3.19018 3.22500 4.07206 4.51653 4.63103 4.95639 5.16245 5.31201 5.58546 5.78584 5.91301 6.19008 6.24158 6.63815 7.38627 7.79666 7.93954 8.25345 8.96584 9.40537 10.51316 10.69179 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.063385 B = 0.006620 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.638975 B = 4228.407594 C = 4370.958601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.579 6.579 11 N -0.763 5.763 12 C 0.203 3.797 13 C -0.161 4.161 14 C -0.204 4.204 15 C 0.089 3.911 16 N -0.472 5.472 17 S 0.260 5.740 18 H 0.269 0.731 19 H 0.383 0.617 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.157 0.843 23 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 -9.911 -0.078 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.420 5.420 12 C 0.076 3.924 13 C -0.292 4.292 14 C -0.240 4.240 15 C -0.109 4.109 16 N -0.293 5.293 17 S 0.412 5.588 18 H 0.080 0.920 19 H 0.214 0.786 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.175 0.825 23 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 5.673 -10.271 -2.163 11.931 hybrid contribution 0.573 0.951 1.942 2.237 sum 6.246 -9.320 -0.220 11.222 Atomic orbital electron populations 1.70020 1.07104 1.27434 1.34945 1.25715 0.94635 1.00372 0.92554 0.86326 0.80208 0.81304 0.78745 1.19735 1.20397 1.18858 1.20854 0.94162 0.89306 1.53709 0.91262 1.18281 0.87163 0.82110 0.76469 1.90610 1.14020 1.86113 1.55418 1.46272 1.08773 1.04673 1.82266 1.19272 0.90479 0.80416 1.02216 1.25876 1.02764 1.02191 0.98378 1.21402 1.01680 0.98536 1.02350 1.22806 0.97168 0.98100 0.92787 1.76736 1.22478 1.19658 1.10426 1.84146 1.35390 1.25575 1.13730 0.91995 0.78565 0.90853 0.91488 0.82500 0.80226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.65 11.85 55.55 0.66 -21.99 14 2 C 0.09 2.40 5.49 -17.37 -0.10 2.31 14 3 Si 0.91 19.84 29.56 -169.99 -5.03 14.81 14 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 14 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 14 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 14 7 C -0.54 -15.09 9.53 -35.63 -0.34 -15.43 14 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 14 9 C 0.56 15.46 7.74 -12.98 -0.10 15.36 14 10 O -0.58 -18.35 15.05 5.20 0.08 -18.28 14 11 N -0.76 -16.63 5.54 -62.90 -0.35 -16.98 14 12 C 0.20 3.76 6.25 -5.20 -0.03 3.73 14 13 C -0.16 -2.43 5.96 -35.41 -0.21 -2.64 14 14 C -0.20 -2.62 10.17 -40.84 -0.42 -3.04 14 15 C 0.09 1.06 11.27 -18.45 -0.21 0.85 14 16 N -0.47 -6.66 12.09 28.86 0.35 -6.32 14 17 S 0.26 3.71 23.72 -107.50 -2.55 1.16 14 18 H 0.27 7.19 8.29 -40.82 -0.34 6.86 14 19 H 0.38 7.52 8.44 -40.82 -0.34 7.17 14 20 H 0.07 1.39 8.14 -51.93 -0.42 0.97 14 21 H 0.07 1.29 8.14 -51.93 -0.42 0.87 14 22 H 0.16 1.76 8.06 -52.49 -0.42 1.34 14 23 H 0.18 1.47 8.06 -52.49 -0.42 1.05 14 LS Contribution 232.55 15.07 3.50 3.50 Total: -1.00 -33.17 232.55 -6.32 -39.49 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -1.58 Total: 3.46 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.40 Total: 1.13 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.66 Total: -45.28 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.08 Total: -18.28 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -2.55 Total: 1.16 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.17 -6.32 -39.49 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404432979.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.372 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds