Wall clock time and date at job start Sun Mar 29 2020 21:47:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30672 * 1
3 3 Si 1.86801 * 119.99791 * 2 1
4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1
5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1
6 6 H 1.48508 * 109.46705 * 154.98442 * 3 2 1
7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1
9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1
10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2
11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2
12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7
13 13 C 1.50693 * 109.47257 * 179.97438 * 12 11 9
14 14 C 1.35141 * 127.25261 * 89.69730 * 13 12 11
15 15 C 1.37808 * 114.76326 * 179.86536 * 14 13 12
16 16 N 1.30083 * 116.88009 * 0.45444 * 15 14 13
17 17 S 1.69599 * 107.15142 * 359.75830 * 16 15 14
18 18 H 0.97001 * 120.00206 * 359.97438 * 1 2 3
19 19 H 0.96999 * 119.99758 * 359.97438 * 11 9 7
20 20 H 1.09002 * 109.46895 * 299.99322 * 12 11 9
21 21 H 1.09000 * 109.47316 * 59.99279 * 12 11 9
22 22 H 1.08001 * 122.61637 * 0.04921 * 14 13 12
23 23 H 1.08002 * 121.55996 * 180.21061 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6178 0.0000
4 1 2.3828 2.1073 -1.3947
5 1 1.4948 2.6200 0.8028
6 1 3.5870 1.4120 0.5921
7 6 2.0070 -1.2128 -0.0005
8 1 3.0823 -1.2156 0.0996
9 6 1.2814 -2.4768 -0.1369
10 8 0.0645 -2.4827 -0.1388
11 7 1.9611 -3.6341 -0.2602
12 6 1.2349 -4.8990 -0.3972
13 6 2.2199 -6.0331 -0.5182
14 6 2.7576 -6.7602 0.4860
15 6 3.6339 -7.7438 0.0813
16 7 3.8468 -7.8522 -1.1974
17 16 2.9025 -6.6699 -1.9635
18 1 -0.4850 0.8400 0.0004
19 1 2.9311 -3.6293 -0.2590
20 1 0.6073 -5.0546 0.4804
21 1 0.6098 -4.8644 -1.2894
22 1 2.5170 -6.5861 1.5244
23 1 4.1242 -8.3917 0.7929
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000404432979.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:47:57
Heat of formation + Delta-G solvation = -28.059767 kcal
Electronic energy + Delta-G solvation = -11276.161503 eV
Core-core repulsion = 9021.885402 eV
Total energy + Delta-G solvation = -2254.276101 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 212.036 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-39.98218 -39.19747 -35.68138 -34.53692 -32.28297 -29.07627 -27.27847 -24.59618
-21.85122 -20.92185 -19.55893 -18.55298 -17.48314 -16.75785 -16.16671 -15.76672
-15.50796 -14.93541 -14.37733 -14.13924 -13.70987 -13.40828 -13.10431 -12.78863
-12.61460 -12.13083 -11.99960 -11.44526 -10.93895 -10.76794 -9.87117 -9.74475
-9.58471 -8.31647 -6.87011 -0.36507 0.45702 0.91520 1.41742 1.42504
1.52876 1.58959 2.25468 2.44945 3.13618 3.50689 3.58109 4.07180
4.25967 4.49918 4.63339 4.93345 4.96599 5.31976 5.61847 5.83646
6.08471 6.22251 6.85599 7.45514 8.43707 8.64148
Molecular weight = 212.04amu
Principal moments of inertia in cm(-1)
A = 0.063385 B = 0.006620 C = 0.006404
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 441.638975 B = 4228.407594 C = 4370.958601
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.820 5.820
2 C 0.029 3.971
3 Si 0.999 3.001
4 H -0.264 1.264
5 H -0.272 1.272
6 H -0.249 1.249
7 C -0.571 4.571
8 H 0.088 0.912
9 C 0.541 3.459
10 O -0.629 6.629
11 N -0.750 5.750
12 C 0.210 3.790
13 C -0.184 4.184
14 C -0.184 4.184
15 C 0.100 3.900
16 N -0.483 5.483
17 S 0.247 5.753
18 H 0.276 0.724
19 H 0.395 0.605
20 H 0.067 0.933
21 H 0.052 0.948
22 H 0.178 0.822
23 H 0.225 0.775
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.294 -10.158 0.634 13.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.449 5.449
2 C -0.186 4.186
3 Si 0.818 3.182
4 H -0.189 1.189
5 H -0.197 1.197
6 H -0.172 1.172
7 C -0.608 4.608
8 H 0.106 0.894
9 C 0.345 3.655
10 O -0.516 6.516
11 N -0.406 5.406
12 C 0.084 3.916
13 C -0.314 4.314
14 C -0.220 4.220
15 C -0.097 4.097
16 N -0.304 5.304
17 S 0.399 5.601
18 H 0.086 0.914
19 H 0.229 0.771
20 H 0.085 0.915
21 H 0.071 0.929
22 H 0.195 0.805
23 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges 7.822 -10.567 -1.469 13.228
hybrid contribution -0.052 0.876 1.765 1.971
sum 7.769 -9.691 0.296 12.424
Atomic orbital electron populations
1.70175 1.09508 1.29102 1.36115 1.26970 0.95527 1.04945 0.91182
0.84991 0.78916 0.75135 0.79162 1.18868 1.19670 1.17177 1.21395
0.95243 0.90066 1.54060 0.89407 1.18604 0.86768 0.83917 0.76194
1.90566 1.16064 1.87317 1.57664 1.45876 1.09289 1.04727 1.80664
1.19107 0.91040 0.80203 1.01268 1.25449 1.03767 1.02419 0.99805
1.21718 1.00178 0.97325 1.02813 1.23383 0.96065 0.97629 0.92650
1.76826 1.22529 1.19484 1.11569 1.84177 1.35896 1.26174 1.13840
0.91429 0.77148 0.91483 0.92933 0.80509 0.75920
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -49.48 11.85 21.83 0.26 -49.23 14
2 C 0.03 1.60 5.49 85.30 0.47 2.07 14
3 Si 1.00 40.25 29.56 68.60 2.03 42.28 14
4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 14
5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 14
6 H -0.25 -9.28 7.11 99.48 0.71 -8.58 14
7 C -0.57 -31.83 9.53 24.83 0.24 -31.59 14
8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 14
9 C 0.54 30.77 7.74 86.36 0.67 31.44 14
10 O -0.63 -41.39 15.05 -4.31 -0.06 -41.45 14
11 N -0.75 -32.95 5.54 -471.14 -2.61 -35.56 14
12 C 0.21 7.88 6.25 85.63 0.53 8.41 14
13 C -0.18 -5.34 5.96 24.97 0.15 -5.19 14
14 C -0.18 -4.22 10.17 21.45 0.22 -4.00 14
15 C 0.10 2.02 11.27 84.85 0.96 2.98 14
16 N -0.48 -12.44 12.09 -62.60 -0.76 -13.20 14
17 S 0.25 6.81 23.72 -56.49 -1.34 5.47 14
18 H 0.28 15.03 8.29 -92.71 -0.77 14.26 14
19 H 0.39 15.30 8.44 -92.71 -0.78 14.51 14
20 H 0.07 2.59 8.14 -2.39 -0.02 2.57 14
21 H 0.05 2.11 8.14 -2.39 -0.02 2.09 14
22 H 0.18 3.35 8.06 -2.91 -0.02 3.32 14
23 H 0.22 2.48 8.06 -2.91 -0.02 2.46 14
Total: -1.00 -73.14 232.55 1.21 -71.93
By element:
Atomic # 1 Polarization: 15.18 SS G_CDS: 0.46 Total: 15.64 kcal
Atomic # 6 Polarization: 0.89 SS G_CDS: 3.23 Total: 4.12 kcal
Atomic # 7 Polarization: -94.87 SS G_CDS: -3.11 Total: -97.98 kcal
Atomic # 8 Polarization: -41.39 SS G_CDS: -0.06 Total: -41.45 kcal
Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal
Atomic # 16 Polarization: 6.81 SS G_CDS: -1.34 Total: 5.47 kcal
Total: -73.14 1.21 -71.93 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404432979.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.869 kcal
(2) G-P(sol) polarization free energy of solvation -73.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.266 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.060 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds