Wall clock time and date at job start Sun Mar 29 2020 21:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48508 * 109.46705 * 154.98442 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47257 * 179.97438 * 12 11 9 14 14 C 1.35141 * 127.25261 * 89.69730 * 13 12 11 15 15 C 1.37808 * 114.76326 * 179.86536 * 14 13 12 16 16 N 1.30083 * 116.88009 * 0.45444 * 15 14 13 17 17 S 1.69599 * 107.15142 * 359.75830 * 16 15 14 18 18 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 19 19 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 20 20 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 21 21 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 22 22 H 1.08001 * 122.61637 * 0.04921 * 14 13 12 23 23 H 1.08002 * 121.55996 * 180.21061 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2199 -6.0331 -0.5182 14 6 2.7576 -6.7602 0.4860 15 6 3.6339 -7.7438 0.0813 16 7 3.8468 -7.8522 -1.1974 17 16 2.9025 -6.6699 -1.9635 18 1 -0.4850 0.8400 0.0004 19 1 2.9311 -3.6293 -0.2590 20 1 0.6073 -5.0546 0.4804 21 1 0.6098 -4.8644 -1.2894 22 1 2.5170 -6.5861 1.5244 23 1 4.1242 -8.3917 0.7929 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404432979.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:57 Heat of formation + Delta-G solvation = -28.059767 kcal Electronic energy + Delta-G solvation = -11276.161503 eV Core-core repulsion = 9021.885402 eV Total energy + Delta-G solvation = -2254.276101 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.98218 -39.19747 -35.68138 -34.53692 -32.28297 -29.07627 -27.27847 -24.59618 -21.85122 -20.92185 -19.55893 -18.55298 -17.48314 -16.75785 -16.16671 -15.76672 -15.50796 -14.93541 -14.37733 -14.13924 -13.70987 -13.40828 -13.10431 -12.78863 -12.61460 -12.13083 -11.99960 -11.44526 -10.93895 -10.76794 -9.87117 -9.74475 -9.58471 -8.31647 -6.87011 -0.36507 0.45702 0.91520 1.41742 1.42504 1.52876 1.58959 2.25468 2.44945 3.13618 3.50689 3.58109 4.07180 4.25967 4.49918 4.63339 4.93345 4.96599 5.31976 5.61847 5.83646 6.08471 6.22251 6.85599 7.45514 8.43707 8.64148 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.063385 B = 0.006620 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.638975 B = 4228.407594 C = 4370.958601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.999 3.001 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.571 4.571 8 H 0.088 0.912 9 C 0.541 3.459 10 O -0.629 6.629 11 N -0.750 5.750 12 C 0.210 3.790 13 C -0.184 4.184 14 C -0.184 4.184 15 C 0.100 3.900 16 N -0.483 5.483 17 S 0.247 5.753 18 H 0.276 0.724 19 H 0.395 0.605 20 H 0.067 0.933 21 H 0.052 0.948 22 H 0.178 0.822 23 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -10.158 0.634 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.818 3.182 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.345 3.655 10 O -0.516 6.516 11 N -0.406 5.406 12 C 0.084 3.916 13 C -0.314 4.314 14 C -0.220 4.220 15 C -0.097 4.097 16 N -0.304 5.304 17 S 0.399 5.601 18 H 0.086 0.914 19 H 0.229 0.771 20 H 0.085 0.915 21 H 0.071 0.929 22 H 0.195 0.805 23 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.822 -10.567 -1.469 13.228 hybrid contribution -0.052 0.876 1.765 1.971 sum 7.769 -9.691 0.296 12.424 Atomic orbital electron populations 1.70175 1.09508 1.29102 1.36115 1.26970 0.95527 1.04945 0.91182 0.84991 0.78916 0.75135 0.79162 1.18868 1.19670 1.17177 1.21395 0.95243 0.90066 1.54060 0.89407 1.18604 0.86768 0.83917 0.76194 1.90566 1.16064 1.87317 1.57664 1.45876 1.09289 1.04727 1.80664 1.19107 0.91040 0.80203 1.01268 1.25449 1.03767 1.02419 0.99805 1.21718 1.00178 0.97325 1.02813 1.23383 0.96065 0.97629 0.92650 1.76826 1.22529 1.19484 1.11569 1.84177 1.35896 1.26174 1.13840 0.91429 0.77148 0.91483 0.92933 0.80509 0.75920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.48 11.85 21.83 0.26 -49.23 14 2 C 0.03 1.60 5.49 85.30 0.47 2.07 14 3 Si 1.00 40.25 29.56 68.60 2.03 42.28 14 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 14 5 H -0.27 -10.55 7.11 99.48 0.71 -9.85 14 6 H -0.25 -9.28 7.11 99.48 0.71 -8.58 14 7 C -0.57 -31.83 9.53 24.83 0.24 -31.59 14 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 14 9 C 0.54 30.77 7.74 86.36 0.67 31.44 14 10 O -0.63 -41.39 15.05 -4.31 -0.06 -41.45 14 11 N -0.75 -32.95 5.54 -471.14 -2.61 -35.56 14 12 C 0.21 7.88 6.25 85.63 0.53 8.41 14 13 C -0.18 -5.34 5.96 24.97 0.15 -5.19 14 14 C -0.18 -4.22 10.17 21.45 0.22 -4.00 14 15 C 0.10 2.02 11.27 84.85 0.96 2.98 14 16 N -0.48 -12.44 12.09 -62.60 -0.76 -13.20 14 17 S 0.25 6.81 23.72 -56.49 -1.34 5.47 14 18 H 0.28 15.03 8.29 -92.71 -0.77 14.26 14 19 H 0.39 15.30 8.44 -92.71 -0.78 14.51 14 20 H 0.07 2.59 8.14 -2.39 -0.02 2.57 14 21 H 0.05 2.11 8.14 -2.39 -0.02 2.09 14 22 H 0.18 3.35 8.06 -2.91 -0.02 3.32 14 23 H 0.22 2.48 8.06 -2.91 -0.02 2.46 14 Total: -1.00 -73.14 232.55 1.21 -71.93 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.46 Total: 15.64 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 3.23 Total: 4.12 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -3.11 Total: -97.98 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.06 Total: -41.45 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.34 Total: 5.47 kcal Total: -73.14 1.21 -71.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404432979.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.869 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds