Wall clock time and date at job start Sun Mar 29 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.76192 * 126.08974 * 2 1 4 4 C 1.70914 * 90.41600 * 179.97438 * 3 2 1 5 5 N 1.29024 * 110.50025 * 359.97438 * 4 3 2 6 6 C 1.32051 * 117.20345 * 0.02562 * 5 4 3 7 7 N 1.39229 * 122.97109 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00027 * 0.03115 * 7 6 5 9 9 O 1.21873 * 119.99929 * 359.97438 * 8 7 6 10 10 C 1.41276 * 120.00356 * 179.97438 * 8 7 6 11 11 H 1.08000 * 119.99470 * 359.97438 * 10 8 7 12 12 C 1.40142 * 120.00030 * 179.97438 * 10 8 7 13 13 N 1.30624 * 120.00257 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99630 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47148 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47475 * 119.99882 * 14 12 10 17 17 H 1.48501 * 109.46896 * 239.99675 * 14 12 10 18 18 H 1.08997 * 109.46994 * 359.97185 * 1 2 3 19 19 H 1.09003 * 109.46971 * 119.97368 * 1 2 3 20 20 H 1.08999 * 109.46957 * 239.97374 * 1 2 3 21 21 H 1.07999 * 124.75027 * 180.02562 * 4 3 2 22 22 H 0.97002 * 120.00411 * 180.02562 * 7 6 5 23 23 H 0.96998 * 119.99784 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5448 1.4238 0.0000 4 6 3.9333 0.4271 0.0008 5 7 3.5956 -0.8182 0.0015 6 6 2.3040 -1.0934 0.0010 7 7 1.8064 -2.3937 0.0012 8 6 2.6557 -3.4403 0.0025 9 8 3.8592 -3.2484 0.0031 10 6 2.1508 -4.7597 0.0033 11 1 1.0843 -4.9297 0.0032 12 6 3.0339 -5.8479 0.0041 13 7 4.3239 -5.6422 0.0037 14 14 2.3663 -7.5925 0.0043 15 1 0.8817 -7.5544 0.0042 16 1 2.8437 -8.3055 -1.2076 17 1 2.8426 -8.3046 1.2173 18 1 -0.3633 1.0276 0.0005 19 1 -0.3633 -0.5134 -0.8902 20 1 -0.3633 -0.5142 0.8897 21 1 4.9508 0.7889 0.0014 22 1 0.8485 -2.5465 0.0005 23 1 4.9350 -6.3954 0.0047 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527532031.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:13 Heat of formation + Delta-G solvation = 14.404648 kcal Electronic energy + Delta-G solvation = -11687.908127 eV Core-core repulsion = 9435.473422 eV Total energy + Delta-G solvation = -2252.434706 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.53500 -36.85279 -33.45543 -32.49388 -31.08371 -27.29286 -25.60572 -23.61556 -21.12397 -18.63624 -17.84035 -16.77646 -15.54558 -15.18943 -14.50415 -14.17805 -13.76586 -12.81145 -12.69974 -12.48537 -12.21186 -12.13464 -11.41293 -11.13572 -10.85615 -10.57603 -10.27220 -9.54412 -8.88094 -8.86143 -8.64757 -7.54253 -7.00377 -6.31956 -4.86476 1.33983 1.99556 2.31653 3.05507 3.14126 3.18877 3.62954 3.99458 4.40457 4.53095 5.21638 5.47146 5.60398 5.81160 5.86799 6.06402 6.14167 6.48327 7.26273 7.59353 7.99170 8.11808 8.48113 8.83380 9.37994 10.44371 10.68641 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.066152 B = 0.008244 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.164043 B = 3395.574214 C = 3803.594917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.330 4.330 3 S 0.060 5.940 4 C 0.040 3.960 5 N -0.430 5.430 6 C 0.345 3.655 7 N -0.664 5.664 8 C 0.533 3.467 9 O -0.529 6.529 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.087 3.913 13 N -0.746 5.746 14 Si 0.913 3.087 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 H 0.061 0.939 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.193 0.807 22 H 0.398 0.602 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 8.833 -0.007 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.457 4.457 3 S 0.307 5.693 4 C -0.262 4.262 5 N -0.145 5.145 6 C 0.118 3.882 7 N -0.310 5.310 8 C 0.340 3.660 9 O -0.407 6.407 10 C -0.574 4.574 11 H 0.088 0.912 12 C -0.136 4.136 13 N -0.374 5.374 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.199 1.199 17 H -0.199 1.199 18 H 0.080 0.920 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.210 0.790 22 H 0.232 0.768 23 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.750 9.340 -0.007 10.479 hybrid contribution -0.984 -1.727 0.001 1.988 sum -5.734 7.613 -0.006 9.531 Atomic orbital electron populations 1.19859 0.87623 1.01817 1.01810 1.24899 1.00246 0.93080 1.27471 1.83353 1.00744 1.12590 1.72661 1.28304 1.03275 0.90558 1.04018 1.66163 1.16427 1.17365 1.14582 1.17718 0.86492 0.87538 0.96449 1.44245 1.10464 1.01411 1.74831 1.17137 0.86120 0.83765 0.78977 1.90783 1.13901 1.83869 1.52149 1.19938 0.94447 0.89807 1.53251 0.91226 1.25754 0.94336 1.00963 0.92534 1.70032 1.02649 1.32329 1.32403 0.86220 0.80018 0.81600 0.78401 1.18572 1.19943 1.19947 0.92002 0.91714 0.91714 0.79029 0.76763 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.71 9.77 36.00 0.35 -0.36 14 2 C -0.33 -5.93 6.66 -35.35 -0.24 -6.17 14 3 S 0.06 0.91 23.21 -107.50 -2.50 -1.59 14 4 C 0.04 0.72 12.20 51.58 0.63 1.34 14 5 N -0.43 -10.27 8.39 -14.76 -0.12 -10.40 14 6 C 0.35 7.82 7.37 -156.47 -1.15 6.67 14 7 N -0.66 -15.92 5.38 -15.10 -0.08 -16.00 14 8 C 0.53 15.57 7.52 -15.11 -0.11 15.46 14 9 O -0.53 -17.53 13.35 5.03 0.07 -17.46 14 10 C -0.54 -15.09 9.29 -37.71 -0.35 -15.44 14 11 H 0.07 1.75 7.85 -52.49 -0.41 1.34 14 12 C 0.09 2.39 5.50 -17.35 -0.10 2.30 14 13 N -0.75 -22.15 11.72 55.56 0.65 -21.49 14 14 Si 0.91 19.68 29.56 -169.99 -5.02 14.65 14 15 H -0.26 -5.42 7.11 56.52 0.40 -5.01 14 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 14 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 14 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 14 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 14 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 14 21 H 0.19 2.71 8.06 -52.49 -0.42 2.29 14 22 H 0.40 8.03 8.11 -40.82 -0.33 7.69 14 23 H 0.27 7.24 8.29 -40.82 -0.34 6.90 14 LS Contribution 227.96 15.07 3.44 3.44 Total: -1.00 -35.37 227.96 -6.11 -41.48 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -1.57 Total: 3.58 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.97 Total: 3.80 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.45 Total: -47.89 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.07 Total: -17.46 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -35.37 -6.11 -41.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527532031.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.881 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds