Wall clock time and date at job start Sun Mar 29 2020 21:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.76192 * 126.08974 * 2 1 4 4 C 1.70914 * 90.41600 * 179.97438 * 3 2 1 5 5 N 1.29024 * 110.50025 * 359.97438 * 4 3 2 6 6 C 1.32051 * 117.20345 * 0.02562 * 5 4 3 7 7 N 1.39229 * 122.97109 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00027 * 0.03115 * 7 6 5 9 9 O 1.21873 * 119.99929 * 359.97438 * 8 7 6 10 10 C 1.41276 * 120.00356 * 179.97438 * 8 7 6 11 11 H 1.08000 * 119.99470 * 359.97438 * 10 8 7 12 12 C 1.40142 * 120.00030 * 179.97438 * 10 8 7 13 13 N 1.30624 * 120.00257 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99630 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47148 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47475 * 119.99882 * 14 12 10 17 17 H 1.48501 * 109.46896 * 239.99675 * 14 12 10 18 18 H 1.08997 * 109.46994 * 359.97185 * 1 2 3 19 19 H 1.09003 * 109.46971 * 119.97368 * 1 2 3 20 20 H 1.08999 * 109.46957 * 239.97374 * 1 2 3 21 21 H 1.07999 * 124.75027 * 180.02562 * 4 3 2 22 22 H 0.97002 * 120.00411 * 180.02562 * 7 6 5 23 23 H 0.96998 * 119.99784 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5448 1.4238 0.0000 4 6 3.9333 0.4271 0.0008 5 7 3.5956 -0.8182 0.0015 6 6 2.3040 -1.0934 0.0010 7 7 1.8064 -2.3937 0.0012 8 6 2.6557 -3.4403 0.0025 9 8 3.8592 -3.2484 0.0031 10 6 2.1508 -4.7597 0.0033 11 1 1.0843 -4.9297 0.0032 12 6 3.0339 -5.8479 0.0041 13 7 4.3239 -5.6422 0.0037 14 14 2.3663 -7.5925 0.0043 15 1 0.8817 -7.5544 0.0042 16 1 2.8437 -8.3055 -1.2076 17 1 2.8426 -8.3046 1.2173 18 1 -0.3633 1.0276 0.0005 19 1 -0.3633 -0.5134 -0.8902 20 1 -0.3633 -0.5142 0.8897 21 1 4.9508 0.7889 0.0014 22 1 0.8485 -2.5465 0.0005 23 1 4.9350 -6.3954 0.0047 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527532031.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:12 Heat of formation + Delta-G solvation = -12.190067 kcal Electronic energy + Delta-G solvation = -11689.061361 eV Core-core repulsion = 9435.473422 eV Total energy + Delta-G solvation = -2253.587939 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.16165 -38.81861 -35.27338 -34.51722 -32.61836 -29.21077 -27.21068 -25.02470 -23.02888 -20.29752 -19.64945 -18.42421 -17.51743 -16.82708 -16.09074 -15.84421 -15.41162 -14.49137 -14.42170 -13.97857 -13.65837 -13.44463 -13.23651 -12.83408 -12.68909 -12.17215 -11.95777 -11.32593 -10.88834 -10.42877 -10.00982 -9.63052 -8.64386 -8.36478 -7.01907 -0.08596 0.65569 0.87670 1.38076 1.38982 1.58192 1.99527 2.21156 2.54641 2.84540 3.71834 3.78324 4.19213 4.34639 4.74706 4.78447 4.96778 5.20566 5.21994 5.82239 6.00624 6.25763 6.73071 6.87941 7.55533 8.43505 8.62117 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.066152 B = 0.008244 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.164043 B = 3395.574214 C = 3803.594917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.316 4.316 3 S 0.173 5.827 4 C 0.016 3.984 5 N -0.504 5.504 6 C 0.290 3.710 7 N -0.666 5.666 8 C 0.519 3.481 9 O -0.584 6.584 10 C -0.566 4.566 11 H 0.092 0.908 12 C 0.028 3.972 13 N -0.803 5.803 14 Si 1.006 2.994 15 H -0.243 1.243 16 H -0.267 1.267 17 H -0.267 1.267 18 H 0.091 0.909 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.219 0.781 22 H 0.412 0.588 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 9.742 -0.008 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.442 4.442 3 S 0.421 5.579 4 C -0.282 4.282 5 N -0.222 5.222 6 C 0.065 3.935 7 N -0.313 5.313 8 C 0.326 3.674 9 O -0.467 6.467 10 C -0.601 4.601 11 H 0.110 0.890 12 C -0.190 4.190 13 N -0.432 5.432 14 Si 0.824 3.176 15 H -0.166 1.166 16 H -0.192 1.192 17 H -0.192 1.192 18 H 0.110 0.890 19 H 0.093 0.907 20 H 0.093 0.907 21 H 0.235 0.765 22 H 0.249 0.751 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.007 10.353 -0.008 12.501 hybrid contribution -0.355 -1.707 0.001 1.744 sum -7.362 8.646 -0.007 11.355 Atomic orbital electron populations 1.20090 0.84607 1.04113 1.02777 1.25690 1.02619 0.93525 1.22391 1.82900 0.96858 1.08686 1.69426 1.28741 1.06001 0.90107 1.03387 1.66072 1.18107 1.20617 1.17379 1.17967 0.87250 0.87781 1.00524 1.43580 1.10447 1.01695 1.75601 1.17523 0.85989 0.85406 0.78446 1.90723 1.16166 1.85265 1.54582 1.20498 0.95823 0.90212 1.53589 0.88997 1.27101 0.94292 1.06573 0.90990 1.70204 1.04793 1.34431 1.33761 0.84855 0.80024 0.74012 0.78664 1.16588 1.19170 1.19175 0.88990 0.90728 0.90734 0.76468 0.75135 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.37 9.77 71.24 0.70 -0.68 14 2 C -0.32 -10.70 6.66 25.01 0.17 -10.53 14 3 S 0.17 4.69 23.21 -56.49 -1.31 3.38 14 4 C 0.02 0.57 12.20 130.66 1.59 2.17 14 5 N -0.50 -24.81 8.39 -200.60 -1.68 -26.50 14 6 C 0.29 13.31 7.37 132.20 0.97 14.28 14 7 N -0.67 -32.80 5.38 -319.84 -1.72 -34.52 14 8 C 0.52 31.63 7.52 84.99 0.64 32.27 14 9 O -0.58 -40.98 13.35 -4.90 -0.07 -41.05 14 10 C -0.57 -32.41 9.29 23.48 0.22 -32.19 14 11 H 0.09 4.62 7.85 -2.91 -0.02 4.60 14 12 C 0.03 1.57 5.50 85.33 0.47 2.04 14 13 N -0.80 -49.58 11.72 21.85 0.26 -49.32 14 14 Si 1.01 40.47 29.56 68.60 2.03 42.50 14 15 H -0.24 -8.93 7.11 99.48 0.71 -8.22 14 16 H -0.27 -10.32 7.11 99.48 0.71 -9.62 14 17 H -0.27 -10.33 7.11 99.48 0.71 -9.62 14 18 H 0.09 1.68 8.14 -2.39 -0.02 1.66 14 19 H 0.07 1.72 8.14 -2.39 -0.02 1.70 14 20 H 0.07 1.71 8.14 -2.39 -0.02 1.70 14 21 H 0.22 6.02 8.06 -2.91 -0.02 5.99 14 22 H 0.41 16.80 8.11 -92.71 -0.75 16.04 14 23 H 0.28 15.39 8.29 -92.71 -0.77 14.62 14 Total: -1.00 -82.05 227.96 2.76 -79.29 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.50 Total: 18.86 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 4.76 Total: 7.36 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.15 Total: -110.34 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.07 Total: -41.05 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.31 Total: 3.38 kcal Total: -82.05 2.76 -79.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527532031.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.101 kcal (2) G-P(sol) polarization free energy of solvation -82.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds