Wall clock time and date at job start Sun Mar 29 2020 21:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 N 1.46500 * 109.47137 * 240.00266 * 2 1 3 5 5 C 1.36936 * 120.00035 * 84.99922 * 4 2 1 6 6 H 1.08004 * 119.99844 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99949 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99970 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 119.99938 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47138 * 90.00558 * 9 7 5 11 11 H 1.48503 * 109.47350 * 209.99893 * 9 7 5 12 12 H 1.48493 * 109.47373 * 330.00587 * 9 7 5 13 13 C 1.52996 * 109.47245 * 119.99880 * 2 1 3 14 14 H 1.09000 * 109.46870 * 180.02562 * 13 2 1 15 15 C 1.52997 * 109.46975 * 60.00405 * 13 2 1 16 16 C 1.53006 * 109.47164 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46626 * 59.99702 * 16 15 13 18 18 C 1.52997 * 109.47592 * 300.00035 * 17 16 15 19 19 H 1.09000 * 109.47140 * 300.00346 * 18 17 16 20 20 C 1.53002 * 109.47092 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.47165 * 60.00300 * 18 17 16 22 22 H 1.08992 * 109.47199 * 60.00388 * 1 2 3 23 23 H 1.08996 * 109.46524 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46876 * 299.99667 * 1 2 3 25 25 H 0.97002 * 120.00030 * 264.99580 * 4 2 1 26 26 H 0.96997 * 119.99816 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46922 * 59.99912 * 15 13 2 28 28 H 1.09000 * 109.47140 * 299.99612 * 15 13 2 29 29 H 1.08993 * 109.46955 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.47050 * 300.00004 * 16 15 13 31 31 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 32 32 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47312 * 300.00120 * 20 18 17 34 34 H 1.09002 * 109.47067 * 60.00147 * 20 18 17 35 35 H 1.09004 * 109.46930 * 180.02562 * 20 18 17 36 36 H 1.08992 * 109.47534 * 180.02562 * 21 18 17 37 37 H 1.08996 * 109.47134 * 59.99508 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0074 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.7366 -0.0053 -4.6432 9 14 3.0556 -2.4742 -3.4255 10 1 1.8582 -3.2927 -3.7444 11 1 4.1306 -2.7664 -4.4075 12 1 3.5311 -2.8046 -2.0581 13 6 2.0401 -0.7212 1.2492 14 1 3.1301 -0.7208 1.2494 15 6 1.5302 -2.1637 1.2492 16 6 2.0407 -2.8852 2.4981 17 6 1.5312 -2.1640 3.7476 18 6 2.0411 -0.7216 3.7477 19 1 3.1311 -0.7215 3.7472 20 6 1.5320 -0.0007 4.9975 21 6 1.5306 -0.0001 2.4988 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.2491 -1.6317 -1.1527 26 1 3.0599 -0.4626 -5.4352 27 1 1.8936 -2.6775 0.3592 28 1 0.4402 -2.1638 1.2492 29 1 1.6778 -3.9129 2.4978 30 1 3.1307 -2.8851 2.4977 31 1 0.4412 -2.1641 3.7481 32 1 1.8953 -2.6777 4.6374 33 1 0.4420 -0.0008 4.9984 34 1 1.8961 -0.5148 5.8871 35 1 1.8949 1.0271 4.9973 36 1 1.8942 1.0274 2.4985 37 1 0.4406 -0.0003 2.4992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590765397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:23 Heat of formation + Delta-G solvation = -23.104561 kcal Electronic energy + Delta-G solvation = -14785.807260 eV Core-core repulsion = 12561.918357 eV Total energy + Delta-G solvation = -2223.888904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.12930 -35.53920 -32.57604 -31.80617 -30.15582 -27.87210 -26.29668 -24.20036 -22.11427 -21.76646 -19.84405 -18.66154 -17.53645 -15.15738 -14.67509 -14.48507 -14.37388 -13.97480 -13.60532 -13.18850 -12.60514 -12.54187 -12.35762 -12.01250 -11.64314 -11.52043 -11.29351 -10.97811 -10.90905 -10.72788 -10.61272 -10.39753 -10.09737 -10.01884 -9.83045 -9.50960 -9.38868 -8.85925 -7.19208 -5.71739 -3.05605 3.40222 3.43262 3.47862 4.63694 4.78495 4.82108 4.92407 5.24382 5.30723 5.47246 5.53994 5.57080 5.63159 5.69191 5.74380 5.81238 5.83659 5.90735 6.01128 6.06350 6.14060 6.21184 6.24319 6.36440 6.41153 6.46998 6.51671 6.56350 6.69210 6.78463 6.93630 7.18004 8.06923 8.48314 9.28093 10.00990 10.21910 11.47135 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045396 B = 0.008223 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.650910 B = 3404.135178 C = 3761.474745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.181 3.819 3 H 0.052 0.948 4 N -0.750 5.750 5 C -0.238 4.238 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.881 3.119 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.093 4.093 14 H 0.067 0.933 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.093 4.093 19 H 0.066 0.934 20 C -0.146 4.146 21 C -0.107 4.107 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.360 0.640 26 H 0.258 0.742 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -3.451 17.899 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.072 3.928 3 H 0.070 0.930 4 N -0.393 5.393 5 C -0.368 4.368 6 H 0.107 0.893 7 C -0.194 4.194 8 N -0.585 5.585 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.112 4.112 14 H 0.086 0.914 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.112 4.112 19 H 0.085 0.915 20 C -0.203 4.203 21 C -0.144 4.144 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.194 0.806 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.761 -3.269 17.709 18.218 hybrid contribution 0.345 -1.328 -0.183 1.384 sum -2.416 -4.597 17.525 18.279 Atomic orbital electron populations 1.22494 0.99189 1.00823 1.00159 1.20184 0.91892 0.95393 0.85311 0.92997 1.42874 1.79697 1.09552 1.07195 1.19115 1.36358 0.95599 0.85689 0.89292 1.24654 1.01738 0.97378 0.95600 1.69703 1.53130 1.35481 1.00227 0.86585 0.78124 0.87099 0.76986 1.21167 1.21799 1.20341 1.21427 1.00247 0.94801 0.94731 0.91432 1.21608 1.00874 0.95721 0.97040 1.21556 1.00644 0.98526 0.95046 1.21566 1.00553 0.95264 0.97430 1.21147 1.00244 0.94904 0.94867 0.91513 1.21828 1.01048 1.00154 0.97287 1.21661 1.00895 0.98649 0.93239 0.92812 0.93424 0.94041 0.80590 0.93182 0.92103 0.91687 0.92551 0.92306 0.92203 0.92719 0.92869 0.93166 0.92820 0.92162 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 8.79 37.16 0.33 -2.66 16 2 C 0.18 3.54 2.72 -67.93 -0.18 3.36 16 3 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.75 -18.05 4.85 -53.42 -0.26 -18.31 16 5 C -0.24 -6.82 10.41 -15.06 -0.16 -6.97 16 6 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 8 N -0.94 -29.92 13.97 55.49 0.78 -29.15 16 9 Si 0.88 22.58 27.73 -169.99 -4.71 17.87 16 10 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 13 C -0.09 -1.48 2.18 -90.62 -0.20 -1.68 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.74 4.68 -26.73 -0.13 -1.87 16 16 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 17 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 18 C -0.09 -1.06 2.72 -90.62 -0.25 -1.30 16 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 21 C -0.11 -1.39 4.13 -26.73 -0.11 -1.50 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.05 0.83 6.43 -51.93 -0.33 0.50 16 24 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 25 H 0.36 8.54 3.92 -40.82 -0.16 8.38 16 26 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 27 H 0.06 1.04 6.51 -51.93 -0.34 0.71 16 28 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -30.60 278.89 -7.24 -37.84 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.49 Total: 4.33 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -0.75 Total: -16.78 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.52 Total: -47.46 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.60 -7.24 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590765397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.736 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds