Wall clock time and date at job start Sun Mar 29 2020 21:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 N 1.46500 * 109.47137 * 240.00266 * 2 1 3 5 5 C 1.36936 * 120.00035 * 84.99922 * 4 2 1 6 6 H 1.08004 * 119.99844 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99949 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99970 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 119.99938 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47138 * 90.00558 * 9 7 5 11 11 H 1.48503 * 109.47350 * 209.99893 * 9 7 5 12 12 H 1.48493 * 109.47373 * 330.00587 * 9 7 5 13 13 C 1.52996 * 109.47245 * 119.99880 * 2 1 3 14 14 H 1.09000 * 109.46870 * 180.02562 * 13 2 1 15 15 C 1.52997 * 109.46975 * 60.00405 * 13 2 1 16 16 C 1.53006 * 109.47164 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46626 * 59.99702 * 16 15 13 18 18 C 1.52997 * 109.47592 * 300.00035 * 17 16 15 19 19 H 1.09000 * 109.47140 * 300.00346 * 18 17 16 20 20 C 1.53002 * 109.47092 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.47165 * 60.00300 * 18 17 16 22 22 H 1.08992 * 109.47199 * 60.00388 * 1 2 3 23 23 H 1.08996 * 109.46524 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46876 * 299.99667 * 1 2 3 25 25 H 0.97002 * 120.00030 * 264.99580 * 4 2 1 26 26 H 0.96997 * 119.99816 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.46922 * 59.99912 * 15 13 2 28 28 H 1.09000 * 109.47140 * 299.99612 * 15 13 2 29 29 H 1.08993 * 109.46955 * 180.02562 * 16 15 13 30 30 H 1.09000 * 109.47050 * 300.00004 * 16 15 13 31 31 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 32 32 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 33 33 H 1.09000 * 109.47312 * 300.00120 * 20 18 17 34 34 H 1.09002 * 109.47067 * 60.00147 * 20 18 17 35 35 H 1.09004 * 109.46930 * 180.02562 * 20 18 17 36 36 H 1.08992 * 109.47534 * 180.02562 * 21 18 17 37 37 H 1.08996 * 109.47134 * 59.99508 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0074 -2.3757 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.7366 -0.0053 -4.6432 9 14 3.0556 -2.4742 -3.4255 10 1 1.8582 -3.2927 -3.7444 11 1 4.1306 -2.7664 -4.4075 12 1 3.5311 -2.8046 -2.0581 13 6 2.0401 -0.7212 1.2492 14 1 3.1301 -0.7208 1.2494 15 6 1.5302 -2.1637 1.2492 16 6 2.0407 -2.8852 2.4981 17 6 1.5312 -2.1640 3.7476 18 6 2.0411 -0.7216 3.7477 19 1 3.1311 -0.7215 3.7472 20 6 1.5320 -0.0007 4.9975 21 6 1.5306 -0.0001 2.4988 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 2.2491 -1.6317 -1.1527 26 1 3.0599 -0.4626 -5.4352 27 1 1.8936 -2.6775 0.3592 28 1 0.4402 -2.1638 1.2492 29 1 1.6778 -3.9129 2.4978 30 1 3.1307 -2.8851 2.4977 31 1 0.4412 -2.1641 3.7481 32 1 1.8953 -2.6777 4.6374 33 1 0.4420 -0.0008 4.9984 34 1 1.8961 -0.5148 5.8871 35 1 1.8949 1.0271 4.9973 36 1 1.8942 1.0274 2.4985 37 1 0.4406 -0.0003 2.4992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590765397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:23 Heat of formation + Delta-G solvation = -41.151407 kcal Electronic energy + Delta-G solvation = -14786.589830 eV Core-core repulsion = 12561.918357 eV Total energy + Delta-G solvation = -2224.671474 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31701 -37.09582 -34.41041 -32.95882 -31.94459 -29.31781 -27.23285 -25.98949 -23.75154 -22.84136 -20.94155 -20.16313 -19.51160 -16.66314 -16.38281 -15.85606 -15.48872 -15.29269 -15.00506 -14.54487 -14.38073 -13.88239 -13.59305 -13.27341 -13.03609 -12.88784 -12.66956 -12.48232 -12.23097 -12.16440 -11.87258 -11.84829 -11.70423 -11.49266 -11.23617 -10.94964 -10.82188 -10.67805 -9.29589 -8.02539 -5.34097 1.34471 1.37717 1.45111 2.47233 3.28696 3.58503 3.82541 3.84595 3.96300 4.21496 4.37557 4.42242 4.51646 4.63498 4.67445 4.72783 4.77502 4.86356 4.88346 4.97430 5.06759 5.09823 5.17546 5.23586 5.25802 5.31735 5.39022 5.45622 5.51334 5.57126 5.61022 5.77086 5.78727 6.23049 7.09331 7.87787 8.06813 9.19632 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045396 B = 0.008223 C = 0.007442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.650910 B = 3404.135178 C = 3761.474745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.034 0.966 4 N -0.752 5.752 5 C -0.226 4.226 6 H 0.054 0.946 7 C -0.067 4.067 8 N -0.986 5.986 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.294 1.294 12 H -0.254 1.254 13 C -0.084 4.084 14 H 0.054 0.946 15 C -0.114 4.114 16 C -0.117 4.117 17 C -0.107 4.107 18 C -0.091 4.091 19 H 0.062 0.938 20 C -0.142 4.142 21 C -0.102 4.102 22 H 0.025 0.975 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.364 0.636 26 H 0.257 0.743 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -5.076 20.635 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.053 0.947 4 N -0.397 5.397 5 C -0.357 4.357 6 H 0.072 0.928 7 C -0.258 4.258 8 N -0.637 5.637 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.179 1.179 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.110 4.110 19 H 0.080 0.920 20 C -0.200 4.200 21 C -0.140 4.140 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.199 0.801 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.210 -4.893 20.508 21.327 hybrid contribution 0.451 -0.708 -1.006 1.311 sum -2.759 -5.602 19.502 20.478 Atomic orbital electron populations 1.22349 0.97472 1.01348 1.00439 1.20461 0.93059 0.94683 0.85391 0.94741 1.42912 1.79942 1.09732 1.07099 1.19077 1.34699 0.94409 0.87503 0.92774 1.25470 1.02652 1.02475 0.95186 1.69886 1.55073 1.37659 1.01130 0.85459 0.77799 0.80952 0.77920 1.20428 1.22117 1.17911 1.21307 0.99378 0.95546 0.94088 0.92791 1.21597 1.01147 0.94888 0.97577 1.21535 1.00440 0.99094 0.94387 1.21556 1.00913 0.94774 0.97194 1.21125 0.99998 0.95237 0.94606 0.91999 1.21790 1.01373 1.00111 0.96688 1.21629 1.01247 0.98471 0.92614 0.95592 0.92712 0.90691 0.80125 0.93437 0.94361 0.91140 0.91294 0.92667 0.91576 0.90966 0.92325 0.91929 0.92744 0.92263 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 8.79 71.98 0.63 -4.81 16 2 C 0.17 6.66 2.72 44.99 0.12 6.78 16 3 H 0.03 1.45 8.08 -2.38 -0.02 1.43 16 4 N -0.75 -36.30 4.85 -322.93 -1.56 -37.86 16 5 C -0.23 -13.29 10.41 84.03 0.87 -12.41 16 6 H 0.05 3.50 8.06 -2.91 -0.02 3.47 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 8 N -0.99 -64.85 13.97 21.65 0.30 -64.55 16 9 Si 0.95 46.92 27.73 68.60 1.90 48.82 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.43 6.52 99.48 0.65 -10.79 16 13 C -0.08 -2.56 2.18 -10.80 -0.02 -2.58 16 14 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 15 C -0.11 -3.22 4.68 30.60 0.14 -3.08 16 16 C -0.12 -2.59 5.92 30.60 0.18 -2.41 16 17 C -0.11 -1.96 5.20 30.59 0.16 -1.80 16 18 C -0.09 -1.78 2.72 -10.80 -0.03 -1.81 16 19 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.14 -2.24 9.19 71.98 0.66 -1.58 16 21 C -0.10 -2.41 4.13 30.59 0.13 -2.29 16 22 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.82 6.43 -2.39 -0.02 1.80 16 24 H 0.07 2.08 6.43 -2.39 -0.02 2.07 16 25 H 0.36 16.94 3.92 -92.71 -0.36 16.57 16 26 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 27 H 0.04 1.24 6.51 -2.39 -0.02 1.22 16 28 H 0.07 1.89 6.43 -2.39 -0.02 1.88 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.63 6.43 -2.39 -0.02 1.62 16 Total: -1.00 -66.92 278.89 4.55 -62.37 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.59 Total: 20.80 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.32 Total: -29.58 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -1.26 Total: -102.41 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.90 Total: 48.82 kcal Total: -66.92 4.55 -62.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590765397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.222 kcal (2) G-P(sol) polarization free energy of solvation -66.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds