Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 115.55298 * 2 1 4 4 C 1.53074 * 117.51494 * 214.27391 * 2 1 3 5 5 C 1.52998 * 59.98509 * 252.52497 * 4 2 1 6 6 H 1.09005 * 117.49869 * 252.49821 * 5 4 2 7 7 C 1.53000 * 117.50449 * 107.50144 * 5 4 2 8 8 N 1.46893 * 109.47552 * 116.24769 * 7 5 4 9 9 C 1.46896 * 111.00159 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47190 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47310 * 59.99853 * 10 9 8 12 12 C 1.53003 * 109.46909 * 299.99970 * 10 9 8 13 13 C 1.50698 * 109.47521 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99714 * 357.34994 * 13 10 9 15 15 C 1.37879 * 120.00574 * 177.35747 * 13 10 9 16 16 N 1.31517 * 119.99804 * 6.54570 * 15 13 10 17 17 Si 1.86798 * 120.00133 * 186.27780 * 15 13 10 18 18 H 1.48496 * 109.47321 * 85.32115 * 17 15 13 19 19 H 1.48498 * 109.46761 * 205.32307 * 17 15 13 20 20 H 1.48506 * 109.47256 * 325.32185 * 17 15 13 21 21 H 1.08996 * 109.47612 * 274.33473 * 1 2 3 22 22 H 1.09007 * 109.47249 * 34.33545 * 1 2 3 23 23 H 1.09005 * 109.47222 * 154.33287 * 1 2 3 24 24 H 1.08998 * 117.49594 * 145.03851 * 4 2 1 25 25 H 1.08999 * 117.51215 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.46807 * 356.25330 * 7 5 4 27 27 H 1.08999 * 109.47328 * 236.26060 * 7 5 4 28 28 H 1.00904 * 111.00306 * 303.96541 * 8 7 5 29 29 H 1.08996 * 109.47276 * 60.00217 * 9 8 7 30 30 H 1.09001 * 109.47319 * 300.00206 * 9 8 7 31 31 H 1.08997 * 109.47525 * 179.97438 * 11 10 9 32 32 H 1.08992 * 109.47332 * 300.00255 * 11 10 9 33 33 H 1.09001 * 109.47108 * 60.00421 * 11 10 9 34 34 H 1.08992 * 109.47239 * 303.85775 * 12 10 9 35 35 H 1.08994 * 109.47183 * 63.86608 * 12 10 9 36 36 H 1.09005 * 109.47062 * 183.86039 * 12 10 9 37 37 H 0.96996 * 119.99685 * 179.72528 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1219 -0.7645 5 6 2.2364 -1.1207 0.7654 6 1 3.1713 -0.8746 1.2690 7 6 1.3588 -2.1556 1.4724 8 7 2.2081 -3.0736 2.2429 9 6 1.3978 -4.0837 2.9363 10 6 2.3153 -5.0189 3.7266 11 6 3.1076 -4.2077 4.7538 12 6 3.2844 -5.7130 2.7675 13 6 1.4841 -6.0556 4.4375 14 1 0.4066 -6.0226 4.3705 15 6 2.0990 -7.0462 5.1735 16 7 3.4001 -7.0134 5.3624 17 14 1.0831 -8.4306 5.9087 18 1 0.9011 -9.5022 4.8969 19 1 1.7849 -8.9836 7.0947 20 1 -0.2445 -7.9066 6.3189 21 1 -0.3634 0.0777 1.0246 22 1 -0.3634 0.8486 -0.5797 23 1 -0.3634 -0.9263 -0.4451 24 1 3.1723 -0.8762 -1.2676 25 1 1.6123 -1.8597 -1.2679 26 1 0.7934 -2.7199 0.7307 27 1 0.6685 -1.6475 2.1457 28 1 2.8998 -3.5090 1.6512 29 1 0.8330 -4.6613 2.2045 30 1 0.7076 -3.5893 3.6198 31 1 3.7609 -4.8740 5.3172 32 1 3.7089 -3.4582 4.2394 33 1 2.4172 -3.7133 5.4372 34 1 2.7198 -6.2348 1.9950 35 1 3.9323 -4.9689 2.3041 36 1 3.8919 -6.4297 3.3203 37 1 3.8321 -7.7081 5.8835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = 6.884839 kcal Electronic energy + Delta-G solvation = -14317.532353 eV Core-core repulsion = 12094.943887 eV Total energy + Delta-G solvation = -2222.588466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.32077 -36.49894 -33.44350 -30.81282 -28.53243 -26.09550 -25.52132 -25.14772 -22.93701 -21.37167 -19.43526 -18.30464 -16.21918 -15.67134 -14.95434 -14.50450 -14.01073 -13.78966 -13.09749 -12.84850 -12.59236 -12.28161 -12.11344 -11.83936 -11.47142 -11.20124 -10.99760 -10.94321 -10.61656 -10.51582 -10.18117 -10.03475 -9.83300 -9.71946 -9.34330 -9.00498 -8.60721 -8.24692 -7.64386 -5.88817 -3.98516 3.33375 3.39934 3.42614 3.79948 4.45332 4.64282 4.77898 4.94095 5.23994 5.34326 5.36179 5.57760 5.72732 5.76483 5.83845 5.91454 5.98694 6.07958 6.26258 6.38231 6.41089 6.48549 6.76145 6.91388 7.12210 7.20134 7.43412 7.52456 7.77852 7.79926 7.87362 8.04371 8.24163 8.39410 8.59732 9.02698 9.65889 11.11580 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059732 B = 0.006047 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.648509 B = 4629.075523 C = 4810.411529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.156 4.156 3 H 0.100 0.900 4 C -0.183 4.183 5 C -0.140 4.140 6 H 0.111 0.889 7 C 0.090 3.910 8 N -0.685 5.685 9 C 0.075 3.925 10 C 0.068 3.932 11 C -0.119 4.119 12 C -0.133 4.133 13 C -0.507 4.507 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.276 1.276 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.337 0.663 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.013 0.987 36 H 0.081 0.919 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 9.754 -9.022 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.174 4.174 3 H 0.118 0.882 4 C -0.220 4.220 5 C -0.159 4.159 6 H 0.129 0.871 7 C -0.040 4.040 8 N -0.317 5.317 9 C -0.053 4.053 10 C 0.067 3.933 11 C -0.177 4.177 12 C -0.191 4.191 13 C -0.546 4.546 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.201 1.201 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.156 0.844 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.032 0.968 36 H 0.100 0.900 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.288 10.054 -8.371 13.281 hybrid contribution -0.823 -1.363 -0.387 1.639 sum -3.112 8.691 -8.758 12.724 Atomic orbital electron populations 1.21327 0.93114 1.01587 1.01877 1.22333 0.95285 0.94334 1.05474 0.88165 1.23185 1.02274 1.01624 0.94901 1.22477 1.01526 0.99075 0.92795 0.87112 1.21445 0.94312 0.93199 0.95015 1.60572 1.16653 1.21955 1.32522 1.22146 0.95724 0.91610 0.95803 1.18098 0.92105 0.91252 0.91816 1.21662 0.99402 0.97846 0.98774 1.21814 0.99333 0.99895 0.98020 1.21107 0.92652 1.10672 1.30125 0.93031 1.24886 0.94892 0.97835 0.95955 1.69851 1.08627 1.33544 1.40208 0.86687 0.80388 0.82731 0.78599 1.20799 1.21358 1.20133 0.92066 0.92576 0.92610 0.89166 0.89106 0.96106 0.91293 0.84404 0.97016 0.92667 0.90596 0.96184 0.96358 0.96358 0.96793 0.89986 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.20 37.15 0.34 -0.91 16 2 C -0.16 -1.73 6.41 -90.58 -0.58 -2.31 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.18 -2.09 9.83 -26.69 -0.26 -2.35 16 5 C -0.14 -1.85 5.94 -90.62 -0.54 -2.39 16 6 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 7 C 0.09 1.39 5.05 -3.83 -0.02 1.37 16 8 N -0.69 -12.70 5.71 -113.79 -0.65 -13.35 16 9 C 0.08 1.63 4.59 -3.83 -0.02 1.61 16 10 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 11 C -0.12 -2.97 8.12 37.16 0.30 -2.67 16 12 C -0.13 -3.19 7.84 37.16 0.29 -2.90 16 13 C -0.51 -13.86 8.01 -34.44 -0.28 -14.13 16 14 H 0.05 1.41 7.75 -52.48 -0.41 1.00 16 15 C 0.07 1.79 5.11 -17.82 -0.09 1.70 16 16 N -0.88 -24.72 9.38 55.43 0.52 -24.20 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 22 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 26 H 0.02 0.32 7.88 -51.93 -0.41 -0.09 16 27 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 28 H 0.34 6.20 6.86 -39.29 -0.27 5.93 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 2.06 6.04 -51.93 -0.31 1.75 16 32 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.01 0.29 6.77 -51.93 -0.35 -0.06 16 36 H 0.08 2.18 6.02 -51.93 -0.31 1.87 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -27.30 290.43 -8.32 -35.62 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.61 Total: 2.71 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -0.94 Total: -21.40 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.13 Total: -37.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.30 -8.32 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.504 kcal (2) G-P(sol) polarization free energy of solvation -27.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds