Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 115.55298 * 2 1 4 4 C 1.53074 * 117.51494 * 214.27391 * 2 1 3 5 5 C 1.52998 * 59.98509 * 252.52497 * 4 2 1 6 6 H 1.09005 * 117.49869 * 252.49821 * 5 4 2 7 7 C 1.53000 * 117.50449 * 107.50144 * 5 4 2 8 8 N 1.46893 * 109.47552 * 116.24769 * 7 5 4 9 9 C 1.46896 * 111.00159 * 180.02562 * 8 7 5 10 10 C 1.52999 * 109.47190 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47310 * 59.99853 * 10 9 8 12 12 C 1.53003 * 109.46909 * 299.99970 * 10 9 8 13 13 C 1.50698 * 109.47521 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99714 * 357.34994 * 13 10 9 15 15 C 1.37879 * 120.00574 * 177.35747 * 13 10 9 16 16 N 1.31517 * 119.99804 * 6.54570 * 15 13 10 17 17 Si 1.86798 * 120.00133 * 186.27780 * 15 13 10 18 18 H 1.48496 * 109.47321 * 85.32115 * 17 15 13 19 19 H 1.48498 * 109.46761 * 205.32307 * 17 15 13 20 20 H 1.48506 * 109.47256 * 325.32185 * 17 15 13 21 21 H 1.08996 * 109.47612 * 274.33473 * 1 2 3 22 22 H 1.09007 * 109.47249 * 34.33545 * 1 2 3 23 23 H 1.09005 * 109.47222 * 154.33287 * 1 2 3 24 24 H 1.08998 * 117.49594 * 145.03851 * 4 2 1 25 25 H 1.08999 * 117.51215 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.46807 * 356.25330 * 7 5 4 27 27 H 1.08999 * 109.47328 * 236.26060 * 7 5 4 28 28 H 1.00904 * 111.00306 * 303.96541 * 8 7 5 29 29 H 1.08996 * 109.47276 * 60.00217 * 9 8 7 30 30 H 1.09001 * 109.47319 * 300.00206 * 9 8 7 31 31 H 1.08997 * 109.47525 * 179.97438 * 11 10 9 32 32 H 1.08992 * 109.47332 * 300.00255 * 11 10 9 33 33 H 1.09001 * 109.47108 * 60.00421 * 11 10 9 34 34 H 1.08992 * 109.47239 * 303.85775 * 12 10 9 35 35 H 1.08994 * 109.47183 * 63.86608 * 12 10 9 36 36 H 1.09005 * 109.47062 * 183.86039 * 12 10 9 37 37 H 0.96996 * 119.99685 * 179.72528 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1219 -0.7645 5 6 2.2364 -1.1207 0.7654 6 1 3.1713 -0.8746 1.2690 7 6 1.3588 -2.1556 1.4724 8 7 2.2081 -3.0736 2.2429 9 6 1.3978 -4.0837 2.9363 10 6 2.3153 -5.0189 3.7266 11 6 3.1076 -4.2077 4.7538 12 6 3.2844 -5.7130 2.7675 13 6 1.4841 -6.0556 4.4375 14 1 0.4066 -6.0226 4.3705 15 6 2.0990 -7.0462 5.1735 16 7 3.4001 -7.0134 5.3624 17 14 1.0831 -8.4306 5.9087 18 1 0.9011 -9.5022 4.8969 19 1 1.7849 -8.9836 7.0947 20 1 -0.2445 -7.9066 6.3189 21 1 -0.3634 0.0777 1.0246 22 1 -0.3634 0.8486 -0.5797 23 1 -0.3634 -0.9263 -0.4451 24 1 3.1723 -0.8762 -1.2676 25 1 1.6123 -1.8597 -1.2679 26 1 0.7934 -2.7199 0.7307 27 1 0.6685 -1.6475 2.1457 28 1 2.8998 -3.5090 1.6512 29 1 0.8330 -4.6613 2.2045 30 1 0.7076 -3.5893 3.6198 31 1 3.7609 -4.8740 5.3172 32 1 3.7089 -3.4582 4.2394 33 1 2.4172 -3.7133 5.4372 34 1 2.7198 -6.2348 1.9950 35 1 3.9323 -4.9689 2.3041 36 1 3.8919 -6.4297 3.3203 37 1 3.8321 -7.7081 5.8835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = -7.733279 kcal Electronic energy + Delta-G solvation = -14318.166242 eV Core-core repulsion = 12094.943887 eV Total energy + Delta-G solvation = -2223.222355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44586 -38.17335 -35.14428 -32.71550 -29.43143 -27.54203 -27.49853 -27.20999 -24.55648 -22.30937 -20.63028 -20.06559 -17.91770 -17.20168 -16.62885 -16.09327 -15.34227 -15.24371 -14.37727 -14.34974 -14.12348 -13.67794 -13.62886 -13.11203 -13.03437 -12.88368 -12.57297 -12.50770 -12.32702 -12.15897 -12.05121 -11.95183 -11.33489 -11.03040 -10.76380 -10.61341 -10.58232 -10.32439 -9.16671 -7.96762 -6.13247 1.43055 1.44621 1.52786 2.46879 2.85784 3.24652 3.39495 3.86036 3.99442 4.12801 4.44004 4.49710 4.53464 4.58457 4.73145 4.85917 4.87891 4.93069 4.97720 5.00400 5.06093 5.16901 5.20840 5.28520 5.35274 5.44108 5.46521 5.54092 5.70371 5.76045 6.18299 6.26510 6.34436 6.50506 6.65602 6.95774 7.53900 9.01455 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.059732 B = 0.006047 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.648509 B = 4629.075523 C = 4810.411529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.114 0.886 4 C -0.175 4.175 5 C -0.158 4.158 6 H 0.104 0.896 7 C 0.094 3.906 8 N -0.687 5.687 9 C 0.090 3.910 10 C 0.058 3.942 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.529 4.529 14 H 0.044 0.956 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.945 3.055 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.339 0.661 29 H 0.008 0.992 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.009 0.991 34 H 0.018 0.982 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 10.523 -10.062 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.133 0.867 4 C -0.212 4.212 5 C -0.177 4.177 6 H 0.122 0.878 7 C -0.035 4.035 8 N -0.319 5.319 9 C -0.039 4.039 10 C 0.057 3.943 11 C -0.164 4.164 12 C -0.180 4.180 13 C -0.567 4.567 14 H 0.062 0.938 15 C -0.176 4.176 16 N -0.541 5.541 17 Si 0.772 3.228 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.199 1.199 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.728 10.835 -9.420 14.614 hybrid contribution -0.682 -1.560 -0.078 1.704 sum -3.410 9.275 -9.499 13.707 Atomic orbital electron populations 1.21363 0.92542 1.02236 1.01939 1.22461 0.95764 0.94459 1.03525 0.86748 1.23251 1.02931 1.01640 0.93416 1.22318 1.01414 1.00086 0.93866 0.87820 1.21433 0.94297 0.92985 0.94762 1.60502 1.16816 1.21184 1.33399 1.21816 0.95038 0.91600 0.95464 1.18161 0.92489 0.91474 0.92142 1.21498 0.98850 0.97491 0.98530 1.21650 0.99061 0.99707 0.97539 1.21419 0.92651 1.11841 1.30805 0.93779 1.25543 0.95880 0.99795 0.96427 1.69979 1.09687 1.33984 1.40474 0.85779 0.79033 0.80111 0.77900 1.20338 1.21073 1.19881 0.92496 0.90760 0.93002 0.87876 0.89096 0.95879 0.91720 0.84208 0.97414 0.93521 0.93070 0.94811 0.97207 0.96282 0.94671 0.92668 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.20 71.98 0.66 -1.59 16 2 C -0.14 -2.82 6.41 -10.77 -0.07 -2.89 16 3 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 4 C -0.18 -3.58 9.83 30.62 0.30 -3.28 16 5 C -0.16 -3.89 5.94 -10.79 -0.06 -3.96 16 6 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 7 C 0.09 2.79 5.05 86.30 0.44 3.23 16 8 N -0.69 -24.73 5.71 -513.92 -2.94 -27.66 16 9 C 0.09 3.83 4.59 86.30 0.40 4.22 16 10 C 0.06 2.85 0.57 -52.93 -0.03 2.82 16 11 C -0.11 -5.29 8.12 71.98 0.58 -4.70 16 12 C -0.12 -5.80 7.84 71.98 0.56 -5.24 16 13 C -0.53 -29.00 8.01 25.60 0.20 -28.79 16 14 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 15 C 0.02 1.24 5.11 84.65 0.43 1.67 16 16 N -0.90 -50.83 9.38 21.45 0.20 -50.63 16 17 Si 0.95 43.62 29.54 68.60 2.03 45.65 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H 0.06 1.09 7.83 -2.39 -0.02 1.07 16 22 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.05 0.98 7.90 -2.38 -0.02 0.96 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.09 1.87 7.94 -2.39 -0.02 1.85 16 26 H 0.02 0.68 7.88 -2.39 -0.02 0.66 16 27 H 0.06 1.95 7.77 -2.39 -0.02 1.94 16 28 H 0.34 11.97 6.86 -89.69 -0.62 11.36 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.80 6.04 -2.39 -0.01 2.79 16 32 H 0.03 1.54 7.60 -2.39 -0.02 1.52 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.03 1.47 6.77 -2.39 -0.02 1.46 16 36 H 0.05 2.93 6.02 -2.38 -0.01 2.92 16 37 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -56.87 290.43 3.11 -53.76 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.40 Total: 17.39 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.42 Total: -38.50 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.74 Total: -78.30 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -56.87 3.11 -53.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.024 kcal (2) G-P(sol) polarization free energy of solvation -56.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds