Wall clock time and date at job start Sun Mar 29 2020 21:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.54431 * 2 1 4 4 C 1.52996 * 117.49904 * 145.70768 * 2 1 3 5 5 C 1.52991 * 117.50014 * 214.33207 * 2 1 3 6 6 H 1.09003 * 117.50449 * 144.99543 * 5 2 1 7 7 C 1.53006 * 117.50024 * 0.02562 * 5 2 1 8 8 N 1.46898 * 109.47138 * 175.00049 * 7 5 2 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.46733 * 299.99953 * 10 9 8 12 12 C 1.53005 * 109.47212 * 59.99438 * 10 9 8 13 13 C 1.50696 * 109.47429 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46692 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47025 * 120.00050 * 17 15 13 20 20 H 1.48505 * 109.46672 * 240.00052 * 17 15 13 21 21 H 1.08998 * 109.47401 * 205.66917 * 1 2 3 22 22 H 1.09007 * 109.47262 * 325.67316 * 1 2 3 23 23 H 1.09005 * 109.47311 * 85.66248 * 1 2 3 24 24 H 1.08999 * 117.49748 * 0.02562 * 4 2 1 25 25 H 1.08997 * 117.50211 * 214.98218 * 4 2 1 26 26 H 1.08997 * 109.46770 * 54.99995 * 7 5 2 27 27 H 1.08995 * 109.47019 * 295.00209 * 7 5 2 28 28 H 1.00901 * 111.00121 * 56.04666 * 8 7 5 29 29 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 30 30 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 31 31 H 1.09002 * 109.47288 * 60.00045 * 11 10 9 32 32 H 1.09001 * 109.46630 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47188 * 299.99959 * 11 10 9 34 34 H 1.08996 * 109.46524 * 60.00440 * 12 10 9 35 35 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 36 36 H 1.08992 * 109.47457 * 300.00343 * 12 10 9 37 37 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2364 -1.1212 0.7646 5 6 2.2364 -1.1206 -0.7654 6 1 3.1713 -0.8746 -1.2689 7 6 1.3588 -2.1553 -1.4727 8 7 2.2082 -3.0720 -2.2449 9 6 1.3978 -4.0812 -2.9397 10 6 2.3153 -5.0157 -3.7306 11 6 3.1083 -4.2037 -4.7567 12 6 3.2839 -5.7112 -2.7719 13 6 1.4840 -6.0514 -4.4429 14 1 0.4088 -6.0436 -4.3419 15 6 2.0960 -7.0084 -5.2244 16 7 3.4053 -7.0176 -5.3478 17 14 1.0656 -8.2917 -6.1079 18 1 -0.3711 -8.0646 -5.8085 19 1 1.2887 -8.1834 -7.5720 20 1 1.4600 -9.6468 -5.6459 21 1 -0.3634 -0.9262 0.4451 22 1 -0.3634 0.8487 0.5795 23 1 -0.3634 0.0777 -1.0248 24 1 1.6112 -1.8591 1.2673 25 1 3.1715 -0.8756 1.2680 26 1 0.6680 -1.6468 -2.1452 27 1 0.7943 -2.7206 -0.7313 28 1 2.9004 -3.5077 -1.6540 29 1 0.8332 -4.6600 -2.2087 30 1 0.7075 -3.5857 -3.6224 31 1 3.7096 -3.4548 -4.2412 32 1 3.7622 -4.8694 -5.3199 33 1 2.4182 -3.7082 -5.4397 34 1 2.7190 -6.2896 -2.0410 35 1 3.9379 -6.3766 -3.3355 36 1 3.8852 -4.9624 -2.2564 37 1 3.8360 -7.6910 -5.8972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:46 Heat of formation + Delta-G solvation = 6.991858 kcal Electronic energy + Delta-G solvation = -14317.639530 eV Core-core repulsion = 12095.055705 eV Total energy + Delta-G solvation = -2222.583825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.32487 -36.50059 -33.44057 -30.80728 -28.53086 -26.09451 -25.52195 -25.14959 -22.94041 -21.37086 -19.43462 -18.30073 -16.22188 -15.67527 -14.95899 -14.50045 -14.01060 -13.78880 -13.09655 -12.85087 -12.58773 -12.27715 -12.11253 -11.83895 -11.46976 -11.20046 -11.02262 -10.93510 -10.58916 -10.50968 -10.16542 -10.05264 -9.83826 -9.71617 -9.33834 -9.01330 -8.58034 -8.26587 -7.64414 -5.88551 -3.98795 3.32021 3.40251 3.43917 3.80129 4.45307 4.64221 4.78022 4.94216 5.23992 5.34438 5.36880 5.57827 5.72782 5.76467 5.83887 5.91543 5.98718 6.08021 6.26309 6.38644 6.41173 6.48796 6.75924 6.93261 7.12104 7.20790 7.42543 7.51647 7.78728 7.79656 7.87600 8.04737 8.25065 8.38262 8.59339 9.02934 9.66086 11.12032 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060030 B = 0.006046 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.322097 B = 4629.903353 C = 4819.893501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.155 4.155 3 H 0.100 0.900 4 C -0.183 4.183 5 C -0.140 4.140 6 H 0.111 0.889 7 C 0.090 3.910 8 N -0.686 5.686 9 C 0.076 3.924 10 C 0.067 3.933 11 C -0.119 4.119 12 C -0.132 4.132 13 C -0.505 4.505 14 H 0.052 0.948 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.888 3.112 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.285 1.285 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.338 0.662 29 H 0.011 0.989 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.074 0.926 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.083 0.917 36 H 0.011 0.989 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.491 9.836 8.920 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.174 4.174 3 H 0.118 0.882 4 C -0.220 4.220 5 C -0.159 4.159 6 H 0.129 0.871 7 C -0.040 4.040 8 N -0.318 5.318 9 C -0.053 4.053 10 C 0.067 3.933 11 C -0.177 4.177 12 C -0.190 4.190 13 C -0.544 4.544 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.212 1.212 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.156 0.844 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.030 0.970 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.327 10.137 8.275 13.291 hybrid contribution -0.816 -1.304 0.284 1.564 sum -3.143 8.833 8.559 12.695 Atomic orbital electron populations 1.21329 0.93115 1.01586 1.01876 1.22320 0.95290 0.94343 1.05468 0.88168 1.23174 1.02280 1.01626 0.94894 1.22475 1.01530 0.99084 0.92799 0.87112 1.21445 0.94314 0.93208 0.95000 1.60575 1.16631 1.22060 1.32491 1.22140 0.95720 0.91620 0.95798 1.18105 0.92120 0.91242 0.91847 1.21639 0.99394 0.97849 0.98791 1.21831 0.99765 0.99325 0.98072 1.21155 0.92893 1.12142 1.28205 0.92989 1.24889 0.94855 0.97471 0.96409 1.69847 1.07963 1.34786 1.39790 0.86604 0.80594 0.81626 0.79538 1.19974 1.21109 1.21175 0.92608 0.92578 0.92069 0.89105 0.89164 0.91297 0.96104 0.84362 0.97032 0.92649 0.96085 0.90769 0.96325 0.96261 0.89846 0.96999 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.16 -1.73 6.41 -90.63 -0.58 -2.31 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.18 -2.09 9.82 -26.73 -0.26 -2.35 16 5 C -0.14 -1.85 5.95 -90.62 -0.54 -2.39 16 6 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 7 C 0.09 1.39 5.05 -3.82 -0.02 1.37 16 8 N -0.69 -12.71 5.71 -113.78 -0.65 -13.36 16 9 C 0.08 1.63 4.59 -3.82 -0.02 1.61 16 10 C 0.07 1.66 0.57 -155.66 -0.09 1.58 16 11 C -0.12 -2.96 8.09 37.16 0.30 -2.66 16 12 C -0.13 -3.18 7.92 37.16 0.29 -2.89 16 13 C -0.51 -13.81 8.01 -34.44 -0.28 -14.09 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 15 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 16 N -0.88 -24.77 9.35 55.43 0.52 -24.25 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 22 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 24 H 0.09 1.04 7.94 -51.93 -0.41 0.63 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 27 H 0.02 0.32 7.88 -51.93 -0.41 -0.09 16 28 H 0.34 6.21 6.77 -39.29 -0.27 5.94 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 32 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 36 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -27.33 290.26 -8.31 -35.64 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.60 Total: 2.68 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.94 Total: -21.37 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.13 Total: -37.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.33 -8.31 -35.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.636 kcal (2) G-P(sol) polarization free energy of solvation -27.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds