Wall clock time and date at job start Sun Mar 29 2020 21:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.54431 * 2 1 4 4 C 1.52996 * 117.49904 * 145.70768 * 2 1 3 5 5 C 1.52991 * 117.50014 * 214.33207 * 2 1 3 6 6 H 1.09003 * 117.50449 * 144.99543 * 5 2 1 7 7 C 1.53006 * 117.50024 * 0.02562 * 5 2 1 8 8 N 1.46898 * 109.47138 * 175.00049 * 7 5 2 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 C 1.53008 * 109.46733 * 299.99953 * 10 9 8 12 12 C 1.53005 * 109.47212 * 59.99438 * 10 9 8 13 13 C 1.50696 * 109.47429 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99822 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00339 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99769 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00300 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46692 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47025 * 120.00050 * 17 15 13 20 20 H 1.48505 * 109.46672 * 240.00052 * 17 15 13 21 21 H 1.08998 * 109.47401 * 205.66917 * 1 2 3 22 22 H 1.09007 * 109.47262 * 325.67316 * 1 2 3 23 23 H 1.09005 * 109.47311 * 85.66248 * 1 2 3 24 24 H 1.08999 * 117.49748 * 0.02562 * 4 2 1 25 25 H 1.08997 * 117.50211 * 214.98218 * 4 2 1 26 26 H 1.08997 * 109.46770 * 54.99995 * 7 5 2 27 27 H 1.08995 * 109.47019 * 295.00209 * 7 5 2 28 28 H 1.00901 * 111.00121 * 56.04666 * 8 7 5 29 29 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 30 30 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 31 31 H 1.09002 * 109.47288 * 60.00045 * 11 10 9 32 32 H 1.09001 * 109.46630 * 179.97438 * 11 10 9 33 33 H 1.09000 * 109.47188 * 299.99959 * 11 10 9 34 34 H 1.08996 * 109.46524 * 60.00440 * 12 10 9 35 35 H 1.09001 * 109.46962 * 180.02562 * 12 10 9 36 36 H 1.08992 * 109.47457 * 300.00343 * 12 10 9 37 37 H 0.97000 * 120.00540 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2364 -1.1212 0.7646 5 6 2.2364 -1.1206 -0.7654 6 1 3.1713 -0.8746 -1.2689 7 6 1.3588 -2.1553 -1.4727 8 7 2.2082 -3.0720 -2.2449 9 6 1.3978 -4.0812 -2.9397 10 6 2.3153 -5.0157 -3.7306 11 6 3.1083 -4.2037 -4.7567 12 6 3.2839 -5.7112 -2.7719 13 6 1.4840 -6.0514 -4.4429 14 1 0.4088 -6.0436 -4.3419 15 6 2.0960 -7.0084 -5.2244 16 7 3.4053 -7.0176 -5.3478 17 14 1.0656 -8.2917 -6.1079 18 1 -0.3711 -8.0646 -5.8085 19 1 1.2887 -8.1834 -7.5720 20 1 1.4600 -9.6468 -5.6459 21 1 -0.3634 -0.9262 0.4451 22 1 -0.3634 0.8487 0.5795 23 1 -0.3634 0.0777 -1.0248 24 1 1.6112 -1.8591 1.2673 25 1 3.1715 -0.8756 1.2680 26 1 0.6680 -1.6468 -2.1452 27 1 0.7943 -2.7206 -0.7313 28 1 2.9004 -3.5077 -1.6540 29 1 0.8332 -4.6600 -2.2087 30 1 0.7075 -3.5857 -3.6224 31 1 3.7096 -3.4548 -4.2412 32 1 3.7622 -4.8694 -5.3199 33 1 2.4182 -3.7082 -5.4397 34 1 2.7190 -6.2896 -2.0410 35 1 3.9379 -6.3766 -3.3355 36 1 3.8852 -4.9624 -2.2564 37 1 3.8360 -7.6910 -5.8972 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:45 Heat of formation + Delta-G solvation = -7.652760 kcal Electronic energy + Delta-G solvation = -14318.274568 eV Core-core repulsion = 12095.055705 eV Total energy + Delta-G solvation = -2223.218863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44959 -38.17598 -35.14279 -32.71089 -29.42990 -27.54018 -27.50359 -27.21123 -24.56094 -22.30878 -20.62687 -20.06562 -17.92328 -17.20853 -16.62593 -16.09432 -15.34485 -15.24039 -14.37602 -14.35043 -14.12334 -13.67806 -13.63004 -13.15641 -12.99476 -12.88744 -12.55344 -12.50647 -12.32339 -12.14734 -12.06915 -11.95103 -11.33102 -11.03537 -10.76855 -10.59983 -10.57159 -10.34569 -9.16713 -7.96573 -6.13643 1.41467 1.44525 1.54177 2.46688 2.85935 3.25400 3.39237 3.86059 3.99608 4.12659 4.44110 4.49738 4.53919 4.58589 4.73137 4.85900 4.88002 4.93097 4.97820 5.00847 5.06270 5.17021 5.20919 5.28523 5.35276 5.43632 5.46534 5.53665 5.70159 5.76874 6.18094 6.26865 6.34317 6.50027 6.65712 6.95811 7.53971 9.01922 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060030 B = 0.006046 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.322097 B = 4629.903353 C = 4819.893501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.115 0.885 4 C -0.175 4.175 5 C -0.158 4.158 6 H 0.104 0.896 7 C 0.094 3.906 8 N -0.688 5.688 9 C 0.090 3.910 10 C 0.058 3.942 11 C -0.106 4.106 12 C -0.121 4.121 13 C -0.526 4.526 14 H 0.044 0.956 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.946 3.054 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.339 0.661 29 H 0.007 0.993 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 10.668 9.883 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.133 0.867 4 C -0.212 4.212 5 C -0.177 4.177 6 H 0.122 0.878 7 C -0.035 4.035 8 N -0.319 5.319 9 C -0.039 4.039 10 C 0.057 3.943 11 C -0.164 4.164 12 C -0.179 4.179 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.177 4.177 16 N -0.543 5.543 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 H 0.070 0.930 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.158 0.842 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.765 10.979 9.248 14.619 hybrid contribution -0.675 -1.524 0.004 1.667 sum -3.439 9.455 9.252 13.668 Atomic orbital electron populations 1.21365 0.92544 1.02233 1.01942 1.22447 0.95769 0.94468 1.03515 0.86747 1.23240 1.02938 1.01643 0.93413 1.22317 1.01420 1.00094 0.93868 0.87812 1.21433 0.94301 0.92993 0.94747 1.60505 1.16789 1.21279 1.33362 1.21812 0.95040 0.91607 0.95459 1.18168 0.92497 0.91464 0.92177 1.21475 0.98853 0.97490 0.98542 1.21663 0.99324 0.99290 0.97603 1.21456 0.92860 1.13238 1.28945 0.93790 1.25548 0.95868 0.99196 0.97119 1.69973 1.09017 1.35240 1.40064 0.85696 0.79251 0.79389 0.78391 1.19700 1.20860 1.20783 0.93005 0.90762 0.92493 0.89103 0.87871 0.91705 0.95893 0.84185 0.97483 0.93452 0.94709 0.93238 0.97094 0.96441 0.92506 0.94732 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.19 71.98 0.66 -1.59 16 2 C -0.14 -2.82 6.41 -10.80 -0.07 -2.89 16 3 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.18 -3.58 9.82 30.59 0.30 -3.28 16 5 C -0.16 -3.89 5.95 -10.80 -0.06 -3.96 16 6 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 7 C 0.09 2.79 5.05 86.31 0.44 3.23 16 8 N -0.69 -24.73 5.71 -513.88 -2.94 -27.66 16 9 C 0.09 3.83 4.59 86.30 0.40 4.22 16 10 C 0.06 2.83 0.57 -52.93 -0.03 2.80 16 11 C -0.11 -5.27 8.09 71.98 0.58 -4.69 16 12 C -0.12 -5.78 7.92 71.98 0.57 -5.21 16 13 C -0.53 -28.88 8.01 25.60 0.21 -28.67 16 14 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 15 C 0.02 1.19 5.15 84.65 0.44 1.62 16 16 N -0.90 -50.93 9.35 21.45 0.20 -50.72 16 17 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H 0.05 0.98 7.90 -2.39 -0.02 0.96 16 22 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.06 1.09 7.83 -2.38 -0.02 1.07 16 24 H 0.09 1.87 7.94 -2.39 -0.02 1.85 16 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.96 7.77 -2.39 -0.02 1.94 16 27 H 0.02 0.67 7.88 -2.39 -0.02 0.65 16 28 H 0.34 11.98 6.77 -89.69 -0.61 11.38 16 29 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 32 H 0.05 2.70 6.07 -2.39 -0.01 2.69 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 36 H 0.03 1.44 6.57 -2.39 -0.02 1.43 16 37 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -56.94 290.26 3.12 -53.81 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.41 Total: 17.25 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.42 Total: -38.41 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.73 Total: -78.39 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -56.94 3.12 -53.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.162 kcal (2) G-P(sol) polarization free energy of solvation -56.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds