Wall clock time and date at job start Sun Mar 29 2020 21:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 115.54963 * 2 1 4 4 C 1.53000 * 117.51523 * 145.69208 * 2 1 3 5 5 C 1.52993 * 117.50031 * 214.31953 * 2 1 3 6 6 H 1.09004 * 117.49564 * 0.02562 * 5 2 1 7 7 C 1.52993 * 117.50037 * 144.99742 * 5 2 1 8 8 N 1.46906 * 109.47378 * 185.00223 * 7 5 2 9 9 C 1.46898 * 110.99888 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.47138 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46957 * 300.00391 * 10 9 8 12 12 C 1.52999 * 109.46890 * 59.99852 * 10 9 8 13 13 C 1.50699 * 109.47125 * 179.97438 * 10 9 8 14 14 H 1.08001 * 120.00013 * 0.02562 * 13 10 9 15 15 C 1.37879 * 119.99819 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99659 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00042 * 179.97438 * 15 13 10 18 18 H 1.48493 * 109.47079 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46843 * 120.00334 * 17 15 13 20 20 H 1.48493 * 109.47043 * 240.00218 * 17 15 13 21 21 H 1.08997 * 109.47495 * 205.67834 * 1 2 3 22 22 H 1.08998 * 109.46863 * 325.67820 * 1 2 3 23 23 H 1.08999 * 109.46595 * 85.67744 * 1 2 3 24 24 H 1.09005 * 117.50097 * 359.97438 * 4 2 1 25 25 H 1.09001 * 117.49985 * 214.96953 * 4 2 1 26 26 H 1.09004 * 109.46862 * 65.00326 * 7 5 2 27 27 H 1.09000 * 109.47250 * 305.00349 * 7 5 2 28 28 H 1.00901 * 111.00013 * 303.95621 * 8 7 5 29 29 H 1.08997 * 109.47334 * 299.99788 * 9 8 7 30 30 H 1.08995 * 109.47296 * 60.00089 * 9 8 7 31 31 H 1.08997 * 109.47218 * 59.99217 * 11 10 9 32 32 H 1.09000 * 109.47068 * 180.02562 * 11 10 9 33 33 H 1.09008 * 109.46757 * 299.99277 * 11 10 9 34 34 H 1.09000 * 109.47014 * 60.00027 * 12 10 9 35 35 H 1.09000 * 109.47438 * 180.02562 * 12 10 9 36 36 H 1.09002 * 109.47339 * 299.99980 * 12 10 9 37 37 H 0.97007 * 119.99919 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 0.7648 5 6 2.2365 -1.1208 -0.7651 6 1 1.6112 -1.8580 -1.2689 7 6 3.5487 -0.7755 -1.4719 8 7 4.0096 -1.9373 -2.2440 9 6 5.2705 -1.6420 -2.9373 10 6 5.7174 -2.8725 -3.7293 11 6 5.9248 -4.0476 -2.7717 12 6 4.6433 -3.2354 -4.7567 13 6 7.0106 -2.5694 -4.4411 14 1 7.4683 -1.5965 -4.3385 15 6 7.6101 -3.5344 -5.2224 16 7 7.0529 -4.7192 -5.3469 17 14 9.2128 -3.1585 -6.1053 18 1 9.6284 -1.7649 -5.8047 19 1 10.2649 -4.0990 -5.6431 20 1 9.0193 -3.3129 -7.5695 21 1 -0.3634 -0.9261 0.4453 22 1 -0.3633 0.8487 0.5794 23 1 -0.3632 0.0775 -1.0248 24 1 1.6119 -1.8583 1.2686 25 1 3.1721 -0.8749 1.2678 26 1 4.3021 -0.5103 -0.7301 27 1 3.3884 0.0672 -2.1444 28 1 4.1038 -2.7498 -1.6532 29 1 5.1225 -0.8052 -3.6199 30 1 6.0356 -1.3830 -2.2055 31 1 4.9892 -4.2666 -2.2572 32 1 6.2436 -4.9241 -3.3358 33 1 6.6901 -3.7890 -2.0397 34 1 4.4954 -2.3983 -5.4389 35 1 4.9613 -4.1123 -5.3206 36 1 3.7076 -3.4546 -4.2422 37 1 7.4745 -5.3980 -5.8969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:47 Heat of formation + Delta-G solvation = -8.293432 kcal Electronic energy + Delta-G solvation = -14212.748597 eV Core-core repulsion = 11989.501952 eV Total energy + Delta-G solvation = -2223.246645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35364 -38.16707 -35.20486 -32.77730 -29.65998 -27.50891 -27.30389 -27.07353 -24.52703 -21.87748 -21.24199 -20.22293 -17.94547 -17.17387 -16.46778 -15.71991 -15.64611 -15.11827 -14.61846 -14.19450 -14.01421 -13.85905 -13.62629 -13.09804 -13.00381 -12.86428 -12.56313 -12.50368 -12.22968 -12.16220 -12.07741 -12.04532 -11.33030 -11.07260 -10.79745 -10.58792 -10.54655 -10.34599 -9.17505 -7.96633 -6.13693 1.41465 1.44540 1.54195 2.46657 2.85025 3.25354 3.35763 3.91090 4.00808 4.13960 4.41512 4.50768 4.52166 4.58641 4.71973 4.87683 4.89926 4.93201 4.97709 4.99451 5.04358 5.17780 5.22537 5.28459 5.34213 5.43383 5.49287 5.53736 5.70103 5.76818 6.17825 6.26484 6.34117 6.49870 6.65281 6.95698 7.53910 9.01823 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.069133 B = 0.005647 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.919433 B = 4957.452216 C = 5033.997167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.146 4.146 3 H 0.104 0.896 4 C -0.175 4.175 5 C -0.156 4.156 6 H 0.103 0.897 7 C 0.091 3.909 8 N -0.687 5.687 9 C 0.089 3.911 10 C 0.057 3.943 11 C -0.120 4.120 12 C -0.105 4.105 13 C -0.527 4.527 14 H 0.044 0.956 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.946 3.054 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.339 0.661 29 H 0.047 0.953 30 H 0.007 0.993 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.010 0.990 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 6.596 9.887 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.165 4.165 3 H 0.122 0.878 4 C -0.211 4.211 5 C -0.174 4.174 6 H 0.121 0.879 7 C -0.038 4.038 8 N -0.319 5.319 9 C -0.040 4.040 10 C 0.057 3.943 11 C -0.178 4.178 12 C -0.163 4.163 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.177 4.177 16 N -0.543 5.543 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.029 0.971 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.672 6.580 9.252 14.914 hybrid contribution 1.758 0.019 0.005 1.758 sum -7.914 6.599 9.257 13.852 Atomic orbital electron populations 1.21365 0.91729 1.02525 1.02094 1.22455 0.96080 0.94302 1.03620 0.87780 1.23278 1.02709 1.01719 0.93441 1.22320 0.98345 1.02927 0.93812 0.87874 1.21493 0.94017 0.93463 0.94833 1.60519 1.31486 1.06474 1.33371 1.21819 0.88074 0.98600 0.95485 1.18173 0.92958 0.91032 0.92182 1.21660 0.97261 1.01325 0.97591 1.21470 0.96696 0.99621 0.98534 1.21460 1.07711 0.98391 1.28975 0.93779 1.25548 1.00009 0.95045 0.97115 1.69978 1.39785 1.04486 1.40023 0.85695 0.80556 0.78081 0.78390 1.19696 1.20796 1.20853 0.92240 0.90998 0.92317 0.87937 0.89030 0.95771 0.91718 0.84163 0.93445 0.97437 0.94722 0.92504 0.96465 0.97105 0.93240 0.94721 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 10.19 71.98 0.73 -1.24 16 2 C -0.15 -2.90 6.13 -10.79 -0.07 -2.97 16 3 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 4 C -0.17 -3.57 9.82 30.59 0.30 -3.27 16 5 C -0.16 -3.83 5.67 -10.80 -0.06 -3.89 16 6 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 7 C 0.09 2.70 5.97 86.30 0.51 3.21 16 8 N -0.69 -24.70 5.71 -513.88 -2.94 -27.63 16 9 C 0.09 3.80 4.59 86.31 0.40 4.20 16 10 C 0.06 2.82 0.57 -52.93 -0.03 2.79 16 11 C -0.12 -5.76 7.92 71.98 0.57 -5.19 16 12 C -0.11 -5.25 8.09 71.98 0.58 -4.67 16 13 C -0.53 -28.91 8.01 25.60 0.21 -28.71 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 15 C 0.02 1.19 5.15 84.65 0.44 1.63 16 16 N -0.90 -50.90 9.35 21.45 0.20 -50.70 16 17 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H 0.06 0.92 7.90 -2.39 -0.02 0.91 16 22 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 1.87 8.05 -2.38 -0.02 1.85 16 25 H 0.09 1.86 8.03 -2.39 -0.02 1.84 16 26 H 0.02 0.70 7.88 -2.38 -0.02 0.69 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.34 11.98 6.77 -89.69 -0.61 11.37 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.03 1.45 6.57 -2.39 -0.02 1.43 16 32 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 33 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 2.70 6.07 -2.39 -0.01 2.69 16 36 H 0.03 1.57 7.60 -2.39 -0.02 1.56 16 37 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 Total: -1.00 -56.90 292.30 3.28 -53.62 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.41 Total: 17.08 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.58 Total: -38.10 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.74 Total: -78.33 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -56.90 3.28 -53.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.325 kcal (2) G-P(sol) polarization free energy of solvation -56.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds