Wall clock time and date at job start Sun Mar 29 2020 21:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47470 * 2 1 4 4 N 1.46902 * 109.47359 * 120.00382 * 2 1 3 5 5 C 1.46895 * 110.99714 * 274.99627 * 4 2 1 6 6 C 1.53004 * 109.47004 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.47057 * 300.00079 * 6 5 4 8 8 C 1.52996 * 109.47207 * 59.99644 * 6 5 4 9 9 C 1.50702 * 109.47097 * 180.02562 * 6 5 4 10 10 H 1.07991 * 119.99840 * 356.86241 * 9 6 5 11 11 C 1.37876 * 119.99801 * 176.85992 * 9 6 5 12 12 N 1.31513 * 120.00106 * 5.82086 * 11 9 6 13 13 Si 1.86792 * 119.99905 * 185.82015 * 11 9 6 14 14 H 1.48499 * 109.47410 * 85.02996 * 13 11 9 15 15 H 1.48504 * 109.47110 * 205.02724 * 13 11 9 16 16 H 1.48500 * 109.47377 * 325.02488 * 13 11 9 17 17 C 1.53005 * 109.46772 * 240.00115 * 2 1 3 18 18 C 1.53000 * 117.49655 * 128.62054 * 17 2 1 19 19 C 1.53001 * 117.49672 * 59.99962 * 17 2 1 20 20 H 1.08994 * 109.47042 * 59.99787 * 1 2 3 21 21 H 1.09000 * 109.47470 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46700 * 299.99370 * 1 2 3 23 23 H 1.00895 * 110.99656 * 151.04115 * 4 2 1 24 24 H 1.08994 * 109.47273 * 299.99729 * 5 4 2 25 25 H 1.09001 * 109.47377 * 60.00386 * 5 4 2 26 26 H 1.09000 * 109.47192 * 53.82326 * 7 6 5 27 27 H 1.08996 * 109.47182 * 173.82246 * 7 6 5 28 28 H 1.09000 * 109.46760 * 293.82246 * 7 6 5 29 29 H 1.09010 * 109.46555 * 60.00235 * 8 6 5 30 30 H 1.08998 * 109.47220 * 179.97438 * 8 6 5 31 31 H 1.08993 * 109.47427 * 300.00464 * 8 6 5 32 32 H 0.97004 * 120.00406 * 180.02562 * 12 11 9 33 33 H 1.09000 * 115.56391 * 274.31447 * 17 2 1 34 34 H 1.09000 * 117.49780 * 0.02562 * 18 17 2 35 35 H 1.08997 * 117.49578 * 145.02200 * 18 17 2 36 36 H 1.09001 * 117.50062 * 214.97529 * 19 17 2 37 37 H 1.09001 * 117.49897 * 359.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2225 2.3468 6 6 2.5965 -0.5330 3.5741 7 6 1.6475 -1.6895 3.8953 8 6 3.9937 -1.0853 3.2849 9 6 2.6604 0.4056 4.7514 10 1 2.4127 1.4490 4.6241 11 6 3.0350 -0.0679 5.9909 12 7 3.4464 -1.3100 6.1236 13 14 2.9582 1.0548 7.4818 14 1 1.5853 1.0338 8.0472 15 1 3.9231 0.5826 8.5072 16 1 3.3055 2.4405 7.0764 17 6 2.0399 -0.7213 -1.2493 18 6 3.0740 0.0052 -2.1118 19 6 1.6356 -0.1494 -2.6096 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 2.9173 -1.1206 1.0285 24 1 2.7590 1.0460 2.1181 25 1 1.0872 0.6162 2.5526 26 1 1.5152 -2.3082 3.0078 27 1 2.0690 -2.2928 4.6992 28 1 0.6822 -1.2911 4.2077 29 1 4.6697 -0.2614 3.0560 30 1 4.3599 -1.6231 4.1594 31 1 3.9470 -1.7642 2.4335 32 1 3.7096 -1.6433 6.9957 33 1 2.1270 -1.8045 -1.1645 34 1 3.3914 0.9967 -1.7889 35 1 3.8414 -0.6001 -2.5943 36 1 1.4567 -0.8564 -3.4197 37 1 1.0059 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:03 Heat of formation + Delta-G solvation = -4.657787 kcal Electronic energy + Delta-G solvation = -14566.921251 eV Core-core repulsion = 12343.832260 eV Total energy + Delta-G solvation = -2223.088991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55189 -37.91891 -35.20271 -33.00226 -30.09538 -27.51486 -27.25471 -26.22368 -23.70797 -23.11364 -20.90388 -20.22882 -17.98740 -17.28656 -16.58146 -15.94282 -15.51604 -15.20580 -14.56475 -14.30704 -14.10247 -13.68630 -13.28098 -13.01635 -12.92215 -12.69840 -12.57024 -12.47906 -12.23046 -12.13126 -12.06141 -11.63056 -11.30101 -11.27650 -10.98587 -10.73706 -10.60134 -10.32534 -9.14811 -7.97461 -6.13066 1.42334 1.44074 1.51853 2.46523 2.91365 3.24805 3.37569 3.82624 4.06920 4.17205 4.39869 4.50040 4.56548 4.59213 4.77275 4.78960 4.88212 4.91679 5.01724 5.04623 5.13209 5.20340 5.27452 5.28409 5.32668 5.41884 5.47789 5.55185 5.70459 5.77439 6.18849 6.30239 6.35534 6.50263 6.69049 6.96271 7.54010 9.01511 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054562 B = 0.006761 C = 0.006632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.057176 B = 4140.284251 C = 4220.689428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.111 3.889 3 H 0.028 0.972 4 N -0.681 5.681 5 C 0.093 3.907 6 C 0.058 3.942 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.529 4.529 10 H 0.043 0.957 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 0.944 3.056 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.164 4.164 18 C -0.185 4.185 19 C -0.159 4.159 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.037 0.963 23 H 0.339 0.661 24 H 0.003 0.997 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.008 0.992 29 H 0.015 0.985 30 H 0.056 0.944 31 H 0.034 0.966 32 H 0.258 0.742 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 1.413 -13.866 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.001 3.999 3 H 0.046 0.954 4 N -0.313 5.313 5 C -0.037 4.037 6 C 0.058 3.942 7 C -0.161 4.161 8 C -0.177 4.177 9 C -0.568 4.568 10 H 0.061 0.939 11 C -0.176 4.176 12 N -0.542 5.542 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.182 4.182 18 C -0.222 4.222 19 C -0.196 4.196 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.158 0.842 24 H 0.022 0.978 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.105 1.047 -13.555 13.946 hybrid contribution 0.841 1.123 1.020 1.734 sum -2.264 2.170 -12.535 12.921 Atomic orbital electron populations 1.21701 0.94192 1.01981 1.00890 1.21122 0.96085 0.94450 0.88247 0.95405 1.60621 1.33381 1.33342 1.03992 1.21810 0.98049 0.92808 0.90986 1.18158 0.92191 0.92990 0.90883 1.21451 0.96837 0.98662 0.99189 1.21669 0.98206 0.98288 0.99570 1.21418 1.45678 0.95026 0.94680 0.93895 1.25533 0.94775 0.96338 1.00940 1.69984 1.44437 1.16055 1.23703 0.85794 0.77732 0.79447 0.79938 1.20426 1.21004 1.19871 1.22364 1.04992 0.99466 0.91417 1.23094 0.93229 1.01780 1.04055 1.22978 0.97271 1.03320 0.96069 0.90990 0.92451 0.94383 0.84164 0.97836 0.93484 0.94286 0.93600 0.97239 0.96601 0.92538 0.94760 0.93295 0.87489 0.89539 0.87822 0.87289 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.26 71.98 0.67 -2.86 16 2 C 0.11 3.22 2.85 44.92 0.13 3.35 16 3 H 0.03 0.86 7.56 -2.39 -0.02 0.84 16 4 N -0.68 -24.24 5.42 -491.57 -2.66 -26.90 16 5 C 0.09 3.95 4.38 86.31 0.38 4.32 16 6 C 0.06 2.88 0.57 -52.93 -0.03 2.85 16 7 C -0.10 -5.15 8.05 71.98 0.58 -4.57 16 8 C -0.12 -5.72 7.95 71.98 0.57 -5.15 16 9 C -0.53 -29.18 8.01 25.60 0.20 -28.97 16 10 H 0.04 2.37 7.75 -2.92 -0.02 2.35 16 11 C 0.02 1.29 5.13 84.65 0.43 1.72 16 12 N -0.90 -51.06 9.46 21.45 0.20 -50.86 16 13 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.16 -3.88 5.11 -10.79 -0.06 -3.93 16 18 C -0.18 -3.79 10.18 30.59 0.31 -3.48 16 19 C -0.16 -2.92 9.73 30.59 0.30 -2.63 16 20 H 0.07 1.57 7.29 -2.39 -0.02 1.56 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.04 1.14 7.45 -2.39 -0.02 1.12 16 23 H 0.34 11.91 6.40 -89.70 -0.57 11.33 16 24 H 0.00 0.15 8.05 -2.39 -0.02 0.13 16 25 H 0.05 2.07 7.44 -2.39 -0.02 2.05 16 26 H 0.04 1.76 7.42 -2.39 -0.02 1.74 16 27 H 0.05 2.48 6.25 -2.39 -0.01 2.47 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 3.02 6.11 -2.39 -0.01 3.00 16 31 H 0.03 1.43 6.57 -2.39 -0.02 1.42 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.09 1.86 8.05 -2.39 -0.02 1.84 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.71 7.61 -2.39 -0.02 1.69 16 Total: -1.00 -57.26 288.04 3.50 -53.76 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.45 Total: 17.43 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.49 Total: -39.33 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -2.46 Total: -77.76 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -57.26 3.50 -53.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.099 kcal (2) G-P(sol) polarization free energy of solvation -57.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds