Wall clock time and date at job start Sun Mar 29 2020 21:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.46980 * 2 1 4 4 N 1.46898 * 109.46733 * 239.99745 * 2 1 3 5 5 C 1.46901 * 110.99640 * 85.00147 * 4 2 1 6 6 C 1.53003 * 109.47098 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47256 * 300.00226 * 6 5 4 8 8 C 1.52997 * 109.47030 * 60.00053 * 6 5 4 9 9 C 1.50705 * 109.47156 * 179.97438 * 6 5 4 10 10 H 1.08006 * 119.99536 * 356.86503 * 9 6 5 11 11 C 1.37873 * 119.99874 * 176.86278 * 9 6 5 12 12 N 1.31510 * 120.00288 * 5.82056 * 11 9 6 13 13 Si 1.86801 * 119.99810 * 185.82244 * 11 9 6 14 14 H 1.48501 * 109.47316 * 85.02710 * 13 11 9 15 15 H 1.48504 * 109.47198 * 205.02667 * 13 11 9 16 16 H 1.48500 * 109.47043 * 325.02377 * 13 11 9 17 17 C 1.52999 * 109.47129 * 120.00235 * 2 1 3 18 18 C 1.53003 * 117.50149 * 299.99882 * 17 2 1 19 19 C 1.52998 * 117.50085 * 231.37591 * 17 2 1 20 20 H 1.09000 * 109.46693 * 299.99634 * 1 2 3 21 21 H 1.08993 * 109.47084 * 59.99647 * 1 2 3 22 22 H 1.09007 * 109.47264 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00395 * 321.04986 * 4 2 1 24 24 H 1.09000 * 109.47592 * 300.00125 * 5 4 2 25 25 H 1.08998 * 109.47141 * 59.99942 * 5 4 2 26 26 H 1.08993 * 109.47000 * 53.82271 * 7 6 5 27 27 H 1.08996 * 109.47085 * 173.82403 * 7 6 5 28 28 H 1.09004 * 109.46928 * 293.82409 * 7 6 5 29 29 H 1.09011 * 109.47094 * 60.00162 * 8 6 5 30 30 H 1.08998 * 109.47510 * 179.97438 * 8 6 5 31 31 H 1.08995 * 109.47604 * 300.00308 * 8 6 5 32 32 H 0.97002 * 120.00383 * 179.97438 * 12 11 9 33 33 H 1.08999 * 115.56256 * 85.68253 * 17 2 1 34 34 H 1.08999 * 117.50210 * 145.01861 * 18 17 2 35 35 H 1.09007 * 117.49233 * 0.02562 * 18 17 2 36 36 H 1.09002 * 117.49179 * 359.97438 * 19 17 2 37 37 H 1.09001 * 117.49979 * 214.98161 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5961 -0.5329 -3.5742 7 6 3.9933 -1.0852 -3.2853 8 6 1.6471 -1.6892 -3.8954 9 6 2.6598 0.4057 -4.7515 10 1 2.3160 1.4245 -4.6491 11 6 3.1571 -0.0360 -5.9592 12 7 3.4687 -1.3038 -6.1179 13 14 3.3883 1.1663 -7.3700 14 1 4.7054 1.8390 -7.2364 15 1 3.3362 0.4320 -8.6598 16 1 2.3071 2.1836 -7.3356 17 6 2.0401 -0.7213 1.2492 18 6 1.6358 -0.1496 2.6096 19 6 3.0742 0.0050 2.1117 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.4495 -1.4979 -1.4100 24 1 1.0870 0.6164 -2.5525 25 1 2.7588 1.0461 -2.1182 26 1 3.9682 -1.6764 -2.3700 27 1 4.3142 -1.7143 -4.1155 28 1 4.6931 -0.2581 -3.1646 29 1 0.6515 -1.2957 -4.1013 30 1 2.0127 -2.2272 -4.7700 31 1 1.6004 -2.3682 -3.0440 32 1 3.8182 -1.6147 -6.9677 33 1 2.1270 -1.8045 1.1643 34 1 1.4569 -0.8567 3.4197 35 1 1.0061 0.7401 2.6146 36 1 3.3915 0.9966 1.7888 37 1 3.8417 -0.6003 2.5941 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:04 Heat of formation + Delta-G solvation = -4.674211 kcal Electronic energy + Delta-G solvation = -14565.928847 eV Core-core repulsion = 12342.839143 eV Total energy + Delta-G solvation = -2223.089704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51845 -37.90154 -35.30737 -33.03671 -29.89611 -27.49953 -27.24980 -26.02679 -23.99727 -23.05515 -21.00351 -20.24313 -17.93515 -17.01373 -16.51091 -16.05231 -15.48867 -15.21541 -14.49209 -14.32989 -14.10032 -13.70210 -13.30546 -13.14236 -12.96004 -12.66800 -12.54390 -12.46201 -12.20044 -12.10605 -12.05316 -11.75073 -11.32289 -11.23932 -10.89081 -10.72365 -10.59357 -10.32269 -9.06766 -7.97075 -6.12643 1.42435 1.44261 1.51943 2.46712 2.96515 3.25304 3.44899 3.91936 4.10452 4.28609 4.36697 4.48402 4.55499 4.60452 4.68103 4.80985 4.88099 4.89047 5.00745 5.07602 5.11982 5.21140 5.27135 5.30613 5.33905 5.42576 5.45755 5.55943 5.70838 5.77845 6.19456 6.31025 6.36413 6.50916 6.70507 6.96926 7.54473 9.01850 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053394 B = 0.006735 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.280066 B = 4156.085822 C = 4182.729011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.110 3.890 3 H 0.061 0.939 4 N -0.682 5.682 5 C 0.093 3.907 6 C 0.058 3.942 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.529 4.529 10 H 0.043 0.957 11 C 0.023 3.977 12 N -0.903 5.903 13 Si 0.944 3.056 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.144 4.144 18 C -0.165 4.165 19 C -0.184 4.184 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.339 0.661 24 H 0.008 0.992 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.007 0.993 29 H 0.016 0.984 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 1.147 13.299 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 H 0.080 0.920 4 N -0.313 5.313 5 C -0.036 4.036 6 C 0.058 3.942 7 C -0.162 4.162 8 C -0.177 4.177 9 C -0.567 4.567 10 H 0.062 0.938 11 C -0.176 4.176 12 N -0.542 5.542 13 Si 0.770 3.230 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.162 4.162 18 C -0.202 4.202 19 C -0.221 4.221 20 H 0.094 0.906 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.158 0.842 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.498 1.107 13.313 13.809 hybrid contribution -0.623 0.728 -1.380 1.680 sum -4.121 1.835 11.933 12.757 Atomic orbital electron populations 1.22383 0.96335 1.02342 1.01916 1.21126 0.92973 0.96528 0.89339 0.92034 1.60554 1.57262 1.09826 1.03687 1.21779 0.96867 0.94489 0.90455 1.18159 0.92610 0.92770 0.90705 1.21450 0.97504 0.98477 0.98725 1.21669 0.97250 0.98627 1.00185 1.21426 1.41673 0.97199 0.96444 0.93844 1.25533 0.95380 0.96325 1.00365 1.69984 1.44663 1.14575 1.24984 0.85801 0.78400 0.79507 0.79245 1.20484 1.21034 1.19823 1.22129 1.04314 0.99129 0.90674 1.23013 0.97366 1.03372 0.96453 1.22997 0.93055 1.01797 1.04222 0.90646 0.94016 0.92066 0.84174 0.97349 0.93802 0.94313 0.93628 0.97337 0.96478 0.92616 0.94772 0.93318 0.88204 0.87548 0.88396 0.89629 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 9.00 71.98 0.65 -3.59 16 2 C 0.11 3.15 2.82 44.92 0.13 3.28 16 3 H 0.06 1.87 7.56 -2.39 -0.02 1.85 16 4 N -0.68 -23.96 5.35 -491.57 -2.63 -26.59 16 5 C 0.09 3.92 4.38 86.30 0.38 4.30 16 6 C 0.06 2.85 0.57 -52.93 -0.03 2.82 16 7 C -0.10 -5.16 8.05 71.98 0.58 -4.58 16 8 C -0.12 -5.68 7.95 71.98 0.57 -5.11 16 9 C -0.53 -29.02 8.01 25.60 0.20 -28.81 16 10 H 0.04 2.39 7.75 -2.91 -0.02 2.37 16 11 C 0.02 1.27 5.13 84.65 0.43 1.71 16 12 N -0.90 -51.03 9.46 21.45 0.20 -50.83 16 13 Si 0.94 43.81 29.54 68.60 2.03 45.83 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 17 C -0.14 -3.53 5.45 -10.79 -0.06 -3.59 16 18 C -0.16 -3.13 9.74 30.59 0.30 -2.83 16 19 C -0.18 -4.12 10.18 30.59 0.31 -3.80 16 20 H 0.07 1.55 7.29 -2.39 -0.02 1.53 16 21 H 0.04 1.14 7.45 -2.39 -0.02 1.12 16 22 H 0.06 1.45 8.13 -2.38 -0.02 1.43 16 23 H 0.34 11.68 6.51 -89.70 -0.58 11.10 16 24 H 0.01 0.35 7.44 -2.39 -0.02 0.34 16 25 H 0.04 1.92 8.05 -2.39 -0.02 1.90 16 26 H 0.04 1.75 7.42 -2.39 -0.02 1.74 16 27 H 0.04 2.47 6.25 -2.39 -0.01 2.45 16 28 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.05 2.96 6.11 -2.39 -0.01 2.95 16 31 H 0.03 1.41 6.57 -2.39 -0.02 1.40 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.10 1.72 7.61 -2.38 -0.02 1.70 16 36 H 0.09 2.00 8.05 -2.39 -0.02 1.98 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -57.01 288.16 3.50 -53.51 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.44 Total: 18.29 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.46 Total: -40.21 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -2.43 Total: -77.42 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -57.01 3.50 -53.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.838 kcal (2) G-P(sol) polarization free energy of solvation -57.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds