Wall clock time and date at job start Sun Mar 29 2020 21:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47187 * 2 1 4 4 C 1.46902 * 110.99687 * 174.58257 * 3 2 1 5 5 C 1.53001 * 109.46946 * 293.95448 * 4 3 2 6 6 C 1.53005 * 117.52163 * 116.28788 * 5 4 3 7 7 C 1.53002 * 117.49777 * 184.91829 * 5 4 3 8 8 C 1.46899 * 111.00142 * 298.53106 * 3 2 1 9 9 H 1.09004 * 109.46883 * 42.59294 * 8 3 2 10 10 C 1.52999 * 109.47036 * 162.58724 * 8 3 2 11 11 C 1.52997 * 109.47339 * 282.58917 * 8 3 2 12 12 C 1.50704 * 109.47120 * 73.64127 * 11 8 3 13 13 H 1.08001 * 119.99770 * 5.72918 * 12 11 8 14 14 C 1.37881 * 119.99543 * 185.73363 * 12 11 8 15 15 N 1.31503 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99482 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47241 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47092 * 119.99614 * 16 14 12 19 19 H 1.48504 * 109.46911 * 239.99578 * 16 14 12 20 20 H 1.08996 * 109.47254 * 187.09237 * 1 2 3 21 21 H 1.09007 * 109.46923 * 307.09644 * 1 2 3 22 22 H 1.09004 * 109.46977 * 67.08697 * 1 2 3 23 23 H 1.08998 * 109.47022 * 240.00020 * 2 1 3 24 24 H 1.08996 * 109.47150 * 120.00275 * 2 1 3 25 25 H 1.09000 * 109.47186 * 173.96013 * 4 3 2 26 26 H 1.09000 * 109.47282 * 53.95179 * 4 3 2 27 27 H 1.09001 * 115.55024 * 330.58249 * 5 4 3 28 28 H 1.08996 * 117.49890 * 214.96869 * 6 5 4 29 29 H 1.08998 * 117.49307 * 359.97438 * 6 5 4 30 30 H 1.08997 * 117.49877 * 359.97213 * 7 5 4 31 31 H 1.09001 * 117.49901 * 144.99782 * 7 5 4 32 32 H 1.09001 * 109.47179 * 60.00151 * 10 8 3 33 33 H 1.08997 * 109.47354 * 180.02562 * 10 8 3 34 34 H 1.09003 * 109.46875 * 300.00599 * 10 8 3 35 35 H 1.09002 * 109.47096 * 193.64273 * 11 8 3 36 36 H 1.09003 * 109.46828 * 313.63791 * 11 8 3 37 37 H 0.97006 * 120.00124 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4824 1.4261 0.1295 5 6 3.8876 0.8968 1.5066 6 6 4.7250 -0.3829 1.5538 7 6 5.3692 0.9656 1.8821 8 6 1.5776 2.0997 -1.2049 9 1 0.5346 1.8574 -1.4089 10 6 1.7171 3.6072 -0.9836 11 6 2.4416 1.6768 -2.3946 12 6 2.0580 0.2842 -2.8241 13 1 1.2160 -0.2105 -2.3629 14 6 2.7821 -0.3584 -3.8059 15 7 3.8071 0.2441 -4.3678 16 14 2.3062 -2.0844 -4.3388 17 1 1.1255 -2.5353 -3.5591 18 1 1.9725 -2.0813 -5.7858 19 1 3.4425 -3.0088 -4.0948 20 1 -0.3633 -1.0198 0.1269 21 1 -0.3633 0.6199 0.8197 22 1 -0.3633 0.4001 -0.9466 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8282 2.4540 0.0193 26 1 3.9334 0.8060 -0.6452 27 1 3.1590 1.0511 2.3026 28 1 4.5474 -1.0704 2.3808 29 1 4.9872 -0.8480 0.6036 30 1 6.0553 1.3876 1.1478 31 1 5.6154 1.1651 2.9250 32 1 2.7600 3.8495 -0.7795 33 1 1.3886 4.1376 -1.8774 34 1 1.1015 3.9084 -0.1359 35 1 2.2842 2.3686 -3.2221 36 1 3.4921 1.6911 -2.1040 37 1 4.3167 -0.2081 -5.0583 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591014436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:25 Heat of formation + Delta-G solvation = 19.804750 kcal Electronic energy + Delta-G solvation = -15032.365386 eV Core-core repulsion = 12810.337170 eV Total energy + Delta-G solvation = -2222.028216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.47731 -36.20278 -32.73267 -31.46341 -29.41730 -27.37521 -25.04088 -23.15236 -22.10921 -21.42955 -20.24056 -18.27509 -16.47514 -15.61663 -14.96490 -14.56563 -14.07184 -13.75477 -13.22047 -12.73830 -12.65179 -12.02145 -11.60973 -11.53200 -11.32889 -11.20977 -11.01973 -10.85848 -10.61870 -10.50782 -10.36446 -10.27050 -9.97877 -9.78947 -9.39926 -9.29023 -8.93676 -8.38020 -7.13232 -6.03533 -4.03038 3.26793 3.35491 3.38436 4.17922 4.42039 4.74418 5.23067 5.31392 5.33650 5.46803 5.78786 5.91252 5.95752 5.99159 6.08791 6.17589 6.24443 6.27403 6.34246 6.42473 6.44743 6.50145 6.61306 6.72628 6.82707 6.87038 6.92487 7.01975 7.24043 7.58289 7.67070 7.91578 8.10651 8.18567 8.39550 9.01660 9.58089 11.07338 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.011387 C = 0.010265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.627476 B = 2458.253975 C = 2726.982179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 N -0.524 5.524 4 C 0.083 3.917 5 C -0.135 4.135 6 C -0.185 4.185 7 C -0.186 4.186 8 C 0.073 3.927 9 H 0.072 0.928 10 C -0.137 4.137 11 C -0.010 4.010 12 C -0.517 4.517 13 H 0.066 0.934 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.883 3.117 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.012 0.988 36 H 0.029 0.971 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 0.961 9.564 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 N -0.248 5.248 4 C -0.046 4.046 5 C -0.154 4.154 6 C -0.222 4.222 7 C -0.223 4.223 8 C -0.035 4.035 9 H 0.090 0.910 10 C -0.194 4.194 11 C -0.048 4.048 12 C -0.555 4.555 13 H 0.084 0.916 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.711 3.289 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.047 0.953 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.143 1.176 9.834 9.970 hybrid contribution 0.245 -1.414 -1.119 1.820 sum -0.898 -0.238 8.716 8.765 Atomic orbital electron populations 1.21776 0.96685 1.00125 1.01547 1.22437 0.94575 0.90562 1.02337 1.62421 1.09585 1.14524 1.38271 1.21640 0.89526 1.00320 0.93069 1.22354 0.92753 1.00469 0.99811 1.23026 1.05379 0.90971 1.02874 1.22905 0.96532 1.01469 1.01411 1.21847 1.00047 0.91794 0.89840 0.90994 1.21808 1.00806 0.96726 1.00105 1.19826 0.96038 0.96269 0.92663 1.21424 1.14087 1.00313 1.19660 0.91590 1.25011 0.95176 0.97719 0.96401 1.69972 1.19129 1.37430 1.26620 0.86674 0.78539 0.85091 0.78616 1.19599 1.21059 1.21093 0.93620 0.93287 0.92438 0.89839 0.92888 0.91496 0.92576 0.87883 0.89596 0.88760 0.89073 0.89473 0.93529 0.93242 0.93587 0.96975 0.95275 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.25 37.16 0.34 -2.15 16 2 C 0.03 0.55 4.99 -3.82 -0.02 0.53 16 3 N -0.52 -10.14 4.44 -226.65 -1.01 -11.15 16 4 C 0.08 1.56 3.95 -3.82 -0.02 1.55 16 5 C -0.14 -2.16 4.72 -90.62 -0.43 -2.59 16 6 C -0.19 -2.78 10.18 -26.73 -0.27 -3.05 16 7 C -0.19 -2.60 10.25 -26.73 -0.27 -2.88 16 8 C 0.07 1.50 2.36 -67.72 -0.16 1.35 16 9 H 0.07 1.52 5.72 -51.93 -0.30 1.23 16 10 C -0.14 -2.46 9.23 37.16 0.34 -2.12 16 11 C -0.01 -0.25 4.11 -27.88 -0.11 -0.36 16 12 C -0.52 -13.83 7.03 -34.44 -0.24 -14.07 16 13 H 0.07 1.72 5.13 -52.49 -0.27 1.45 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.26 13.28 55.43 0.74 -25.53 16 16 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 22 H 0.06 1.06 5.97 -51.93 -0.31 0.75 16 23 H 0.08 1.89 4.60 -51.93 -0.24 1.65 16 24 H 0.05 0.95 7.12 -51.93 -0.37 0.58 16 25 H 0.07 1.26 6.49 -51.93 -0.34 0.92 16 26 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 27 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.83 6.67 -51.93 -0.35 0.48 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.01 0.32 8.07 -51.93 -0.42 -0.09 16 36 H 0.03 0.78 5.71 -51.93 -0.30 0.48 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -27.95 283.38 -8.10 -36.05 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.15 Total: 2.36 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -0.93 Total: -22.28 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.27 Total: -36.67 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.95 -8.10 -36.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.855 kcal (2) G-P(sol) polarization free energy of solvation -27.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds