Wall clock time and date at job start Sun Mar 29 2020 21:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47187 * 2 1 4 4 C 1.46902 * 110.99687 * 174.58257 * 3 2 1 5 5 C 1.53001 * 109.46946 * 293.95448 * 4 3 2 6 6 C 1.53005 * 117.52163 * 116.28788 * 5 4 3 7 7 C 1.53002 * 117.49777 * 184.91829 * 5 4 3 8 8 C 1.46899 * 111.00142 * 298.53106 * 3 2 1 9 9 H 1.09004 * 109.46883 * 42.59294 * 8 3 2 10 10 C 1.52999 * 109.47036 * 162.58724 * 8 3 2 11 11 C 1.52997 * 109.47339 * 282.58917 * 8 3 2 12 12 C 1.50704 * 109.47120 * 73.64127 * 11 8 3 13 13 H 1.08001 * 119.99770 * 5.72918 * 12 11 8 14 14 C 1.37881 * 119.99543 * 185.73363 * 12 11 8 15 15 N 1.31503 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99482 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47241 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47092 * 119.99614 * 16 14 12 19 19 H 1.48504 * 109.46911 * 239.99578 * 16 14 12 20 20 H 1.08996 * 109.47254 * 187.09237 * 1 2 3 21 21 H 1.09007 * 109.46923 * 307.09644 * 1 2 3 22 22 H 1.09004 * 109.46977 * 67.08697 * 1 2 3 23 23 H 1.08998 * 109.47022 * 240.00020 * 2 1 3 24 24 H 1.08996 * 109.47150 * 120.00275 * 2 1 3 25 25 H 1.09000 * 109.47186 * 173.96013 * 4 3 2 26 26 H 1.09000 * 109.47282 * 53.95179 * 4 3 2 27 27 H 1.09001 * 115.55024 * 330.58249 * 5 4 3 28 28 H 1.08996 * 117.49890 * 214.96869 * 6 5 4 29 29 H 1.08998 * 117.49307 * 359.97438 * 6 5 4 30 30 H 1.08997 * 117.49877 * 359.97213 * 7 5 4 31 31 H 1.09001 * 117.49901 * 144.99782 * 7 5 4 32 32 H 1.09001 * 109.47179 * 60.00151 * 10 8 3 33 33 H 1.08997 * 109.47354 * 180.02562 * 10 8 3 34 34 H 1.09003 * 109.46875 * 300.00599 * 10 8 3 35 35 H 1.09002 * 109.47096 * 193.64273 * 11 8 3 36 36 H 1.09003 * 109.46828 * 313.63791 * 11 8 3 37 37 H 0.97006 * 120.00124 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4824 1.4261 0.1295 5 6 3.8876 0.8968 1.5066 6 6 4.7250 -0.3829 1.5538 7 6 5.3692 0.9656 1.8821 8 6 1.5776 2.0997 -1.2049 9 1 0.5346 1.8574 -1.4089 10 6 1.7171 3.6072 -0.9836 11 6 2.4416 1.6768 -2.3946 12 6 2.0580 0.2842 -2.8241 13 1 1.2160 -0.2105 -2.3629 14 6 2.7821 -0.3584 -3.8059 15 7 3.8071 0.2441 -4.3678 16 14 2.3062 -2.0844 -4.3388 17 1 1.1255 -2.5353 -3.5591 18 1 1.9725 -2.0813 -5.7858 19 1 3.4425 -3.0088 -4.0948 20 1 -0.3633 -1.0198 0.1269 21 1 -0.3633 0.6199 0.8197 22 1 -0.3633 0.4001 -0.9466 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.8282 2.4540 0.0193 26 1 3.9334 0.8060 -0.6452 27 1 3.1590 1.0511 2.3026 28 1 4.5474 -1.0704 2.3808 29 1 4.9872 -0.8480 0.6036 30 1 6.0553 1.3876 1.1478 31 1 5.6154 1.1651 2.9250 32 1 2.7600 3.8495 -0.7795 33 1 1.3886 4.1376 -1.8774 34 1 1.1015 3.9084 -0.1359 35 1 2.2842 2.3686 -3.2221 36 1 3.4921 1.6911 -2.1040 37 1 4.3167 -0.2081 -5.0583 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591014436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:25 Heat of formation + Delta-G solvation = 3.728306 kcal Electronic energy + Delta-G solvation = -15033.062513 eV Core-core repulsion = 12810.337170 eV Total energy + Delta-G solvation = -2222.725343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04403 -37.56609 -34.78801 -33.09386 -30.97673 -29.30795 -26.52861 -25.07392 -23.42646 -22.93032 -21.62938 -19.92885 -18.56506 -17.08666 -16.58950 -16.38893 -15.56053 -15.30841 -14.72301 -14.47886 -14.23651 -13.84653 -13.35735 -13.05570 -13.02050 -12.67012 -12.46509 -12.36298 -12.30025 -12.18120 -12.11726 -11.77347 -11.69560 -11.29268 -10.99418 -10.94751 -10.64137 -10.51719 -8.85012 -8.18318 -6.23232 1.34150 1.36335 1.47342 2.38463 2.94082 3.12220 3.28022 3.97574 4.10262 4.15551 4.28392 4.43777 4.59054 4.62740 4.67994 4.79198 4.81222 4.83299 4.91828 5.03766 5.05233 5.07526 5.17637 5.24994 5.30074 5.31724 5.37665 5.45554 5.52263 5.64568 5.66634 5.84343 6.25003 6.47860 6.50281 6.89812 7.41237 8.93335 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.011387 C = 0.010265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.627476 B = 2458.253975 C = 2726.982179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.029 3.971 3 N -0.511 5.511 4 C 0.090 3.910 5 C -0.144 4.144 6 C -0.187 4.187 7 C -0.168 4.168 8 C 0.078 3.922 9 H 0.071 0.929 10 C -0.130 4.130 11 C -0.003 4.003 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.947 3.053 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.041 0.959 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.012 0.988 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.069 0.931 35 H -0.018 1.018 36 H 0.005 0.995 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 0.444 11.593 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 N -0.235 5.235 4 C -0.038 4.038 5 C -0.163 4.163 6 C -0.224 4.224 7 C -0.206 4.206 8 C -0.031 4.031 9 H 0.089 0.911 10 C -0.187 4.187 11 C -0.041 4.041 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.773 3.227 17 H -0.182 1.182 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.081 0.919 21 H 0.084 0.916 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.031 0.969 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.001 0.999 36 H 0.023 0.977 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.115 0.660 11.876 12.081 hybrid contribution 0.568 -1.230 -1.738 2.203 sum -1.547 -0.571 10.138 10.272 Atomic orbital electron populations 1.21716 0.94818 1.01567 1.01344 1.22401 0.96135 0.90066 1.01266 1.62549 1.09709 1.14563 1.36670 1.21523 0.88960 0.99407 0.93941 1.22224 0.94366 1.01620 0.98062 1.23035 1.05250 0.91454 1.02649 1.22999 0.94695 0.99997 1.02879 1.21751 0.98829 0.93848 0.88626 0.91089 1.21733 1.01242 0.94494 1.01263 1.19746 0.95630 0.95222 0.93523 1.21778 1.13762 1.00941 1.19018 0.90874 1.25841 0.95247 1.01726 0.96775 1.70106 1.20550 1.39238 1.27558 0.85655 0.78536 0.80361 0.78174 1.18213 1.20854 1.20951 0.91860 0.91597 0.93972 0.93502 0.91312 0.91839 0.96947 0.86604 0.87228 0.91151 0.89783 0.86501 0.93715 0.92901 0.91240 0.99932 0.97659 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.25 71.98 0.67 -3.77 16 2 C 0.03 1.09 4.99 86.30 0.43 1.52 16 3 N -0.51 -19.40 4.44 -870.98 -3.87 -23.26 16 4 C 0.09 3.43 3.95 86.30 0.34 3.77 16 5 C -0.14 -4.37 4.72 -10.79 -0.05 -4.42 16 6 C -0.19 -5.33 10.18 30.60 0.31 -5.02 16 7 C -0.17 -4.36 10.25 30.60 0.31 -4.05 16 8 C 0.08 3.22 2.36 44.91 0.11 3.32 16 9 H 0.07 2.96 5.72 -2.38 -0.01 2.95 16 10 C -0.13 -4.54 9.23 71.98 0.66 -3.88 16 11 C 0.00 -0.16 4.11 29.85 0.12 -0.04 16 12 C -0.52 -28.30 7.03 25.60 0.18 -28.12 16 13 H 0.07 3.83 5.13 -2.91 -0.01 3.82 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.93 -56.82 13.28 21.45 0.28 -56.54 16 16 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 22 H 0.04 1.48 5.97 -2.38 -0.01 1.47 16 23 H 0.05 2.13 4.60 -2.39 -0.01 2.12 16 24 H 0.07 2.35 7.12 -2.39 -0.02 2.33 16 25 H 0.06 2.42 6.49 -2.39 -0.02 2.40 16 26 H 0.01 0.58 6.31 -2.39 -0.02 0.56 16 27 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.07 2.34 8.03 -2.39 -0.02 2.32 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.04 1.56 6.67 -2.39 -0.02 1.55 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 35 H -0.02 -1.01 8.07 -2.39 -0.02 -1.03 16 36 H 0.01 0.29 5.71 -2.39 -0.01 0.28 16 37 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -61.11 283.38 3.02 -58.09 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.03 Total: 15.52 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 3.55 Total: -40.15 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.58 Total: -79.80 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.11 3.02 -58.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591014436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.820 kcal (2) G-P(sol) polarization free energy of solvation -61.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds