Wall clock time and date at job start Sun Mar 29 2020 21:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47345 * 120.00100 * 2 1 3 5 5 C 1.50701 * 109.47126 * 185.00289 * 4 2 1 6 6 H 1.07993 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00010 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46906 * 119.99947 * 9 7 5 12 12 H 1.48494 * 109.47339 * 239.99763 * 9 7 5 13 13 N 1.46905 * 109.47467 * 240.00495 * 2 1 3 14 14 C 1.48530 * 110.99574 * 311.00848 * 13 2 1 15 15 C 1.54941 * 103.22660 * 159.71893 * 14 13 2 16 16 C 1.54587 * 102.92168 * 322.58687 * 15 14 13 17 17 C 1.53009 * 110.30842 * 263.04024 * 16 15 14 18 18 C 1.53004 * 110.31238 * 140.87239 * 16 15 14 19 19 C 1.47904 * 111.00053 * 68.40340 * 13 2 1 20 20 H 1.09009 * 109.47198 * 67.74640 * 1 2 3 21 21 H 1.08999 * 109.46821 * 187.73968 * 1 2 3 22 22 H 1.08994 * 109.47397 * 307.74101 * 1 2 3 23 23 H 1.09005 * 109.46584 * 65.00318 * 4 2 1 24 24 H 1.09000 * 109.47171 * 305.00133 * 4 2 1 25 25 H 0.96998 * 120.00163 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.66840 * 278.15359 * 14 13 2 27 27 H 1.09006 * 110.66812 * 41.28662 * 14 13 2 28 28 H 1.08996 * 110.72349 * 204.22761 * 15 14 13 29 29 H 1.08999 * 110.87338 * 81.01606 * 15 14 13 30 30 H 1.09000 * 109.46768 * 175.71767 * 17 16 15 31 31 H 1.08997 * 109.46631 * 295.71204 * 17 16 15 32 32 H 1.08990 * 109.47145 * 55.71725 * 17 16 15 33 33 H 1.08998 * 109.46779 * 304.28126 * 18 16 15 34 34 H 1.09004 * 109.46890 * 64.28030 * 18 16 15 35 35 H 1.08995 * 109.47089 * 184.28173 * 18 16 15 36 36 H 1.09003 * 109.91504 * 333.51136 * 19 13 2 37 37 H 1.08994 * 109.91393 * 94.60601 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 3.5765 -1.8378 3.2994 9 14 6.0921 -1.0622 2.4361 10 1 6.5838 -0.2926 1.2650 11 1 6.4871 -0.3667 3.6873 12 1 6.6856 -2.4233 2.4179 13 7 2.0197 -0.6924 -1.1995 14 6 1.3393 -2.0011 -1.3736 15 6 1.5589 -2.3180 -2.8743 16 6 1.4310 -0.9301 -3.5430 17 6 0.0155 -0.7323 -4.0895 18 6 2.4600 -0.7846 -4.6659 19 6 1.7173 0.0850 -2.4209 20 1 -0.3634 0.3892 -0.9512 21 1 -0.3633 -1.0183 0.1384 22 1 -0.3634 0.6290 0.8126 23 1 1.7517 -1.7716 1.2054 24 1 1.6054 -0.2618 2.1369 25 1 4.0608 -2.2446 4.0348 26 1 1.8042 -2.7628 -0.7476 27 1 0.2759 -1.9146 -1.1504 28 1 0.7887 -2.9958 -3.2422 29 1 2.5512 -2.7368 -3.0417 30 1 -0.0818 0.2770 -4.4893 31 1 -0.1724 -1.4568 -4.8819 32 1 -0.7073 -0.8763 -3.2865 33 1 3.4589 -0.9654 -4.2689 34 1 2.2448 -1.5085 -5.4519 35 1 2.4094 0.2237 -5.0767 36 1 0.8411 0.7117 -2.2546 37 1 2.5726 0.7059 -2.6871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:41 Heat of formation + Delta-G solvation = -12.426814 kcal Electronic energy + Delta-G solvation = -14899.381613 eV Core-core repulsion = 12675.955732 eV Total energy + Delta-G solvation = -2223.425882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37324 -35.30325 -32.52584 -30.50986 -28.74874 -27.40345 -27.06453 -24.77999 -23.05895 -21.68492 -18.93199 -18.38555 -16.10071 -15.44838 -15.02174 -14.35225 -14.03560 -13.72117 -13.27426 -13.02767 -12.81738 -12.22603 -11.97159 -11.69656 -11.66582 -11.41478 -11.28495 -10.97327 -10.80630 -10.64147 -10.42948 -10.27270 -10.24816 -10.09058 -9.84579 -9.12101 -8.93030 -8.22363 -7.44273 -5.84660 -3.82017 3.40877 3.48051 3.54201 4.60024 4.71399 4.81163 4.97189 5.12038 5.52065 5.54379 5.61960 5.67190 5.70288 5.79689 5.84487 5.92654 5.94101 6.01231 6.06459 6.11657 6.18953 6.25059 6.37565 6.50735 6.52524 6.61798 6.66413 6.78457 7.05781 7.56737 7.69433 7.89871 8.07748 8.17398 8.63726 9.24264 9.79419 11.27538 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038074 B = 0.008576 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.229068 B = 3263.959643 C = 3621.141044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.077 3.923 3 H 0.067 0.933 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.486 5.486 14 C 0.034 3.966 15 C -0.114 4.114 16 C -0.078 4.078 17 C -0.135 4.135 18 C -0.133 4.133 19 C 0.038 3.962 20 H 0.042 0.958 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.256 0.744 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 1.479 -13.187 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.032 4.032 3 H 0.085 0.915 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.210 5.210 14 C -0.094 4.094 15 C -0.152 4.152 16 C -0.079 4.079 17 C -0.193 4.193 18 C -0.190 4.190 19 C -0.090 4.090 20 H 0.060 0.940 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.557 1.338 -12.952 14.157 hybrid contribution 0.117 0.150 0.123 0.226 sum -5.440 1.487 -12.828 14.013 Atomic orbital electron populations 1.22531 0.99859 1.01528 1.00376 1.22041 0.90053 0.98452 0.92641 0.91461 1.19130 0.96319 0.95286 0.89698 1.21226 0.91869 1.32687 1.06825 0.92141 1.25012 0.98019 0.95941 0.96032 1.69977 1.35077 1.37158 1.12412 0.86574 0.86482 0.77541 0.77617 1.19787 1.21426 1.21344 1.64979 1.53299 1.02056 1.00617 1.23241 0.97136 0.93706 0.95290 1.22618 1.01679 0.95423 0.95512 1.21405 0.95013 0.96066 0.95367 1.21875 0.95868 1.01100 1.00433 1.21828 0.98993 1.00875 0.97342 1.23040 0.99462 0.95854 0.90653 0.93952 0.92595 0.92717 0.96435 0.96497 0.93433 0.89852 0.93847 0.91986 0.90964 0.92939 0.92896 0.92867 0.92068 0.93169 0.93096 0.94249 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.17 37.16 0.30 -2.96 16 2 C 0.08 1.61 2.22 -67.71 -0.15 1.46 16 3 H 0.07 1.46 8.10 -51.93 -0.42 1.03 16 4 C 0.03 0.86 4.46 -27.88 -0.12 0.73 16 5 C -0.49 -14.02 8.84 -34.44 -0.30 -14.33 16 6 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.78 13.29 55.43 0.74 -27.04 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.49 -9.61 4.95 -222.50 -1.10 -10.71 16 14 C 0.03 0.61 5.57 -1.90 -0.01 0.60 16 15 C -0.11 -1.67 6.16 -24.87 -0.15 -1.83 16 16 C -0.08 -1.06 0.97 -153.15 -0.15 -1.20 16 17 C -0.14 -1.56 8.21 37.16 0.31 -1.26 16 18 C -0.13 -1.60 8.24 37.16 0.31 -1.30 16 19 C 0.04 0.62 5.76 -2.75 -0.02 0.60 16 20 H 0.04 0.67 6.28 -51.92 -0.33 0.34 16 21 H 0.06 0.99 6.41 -51.93 -0.33 0.66 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.02 0.48 7.10 -51.93 -0.37 0.11 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.08 1.68 7.65 -51.93 -0.40 1.28 16 27 H 0.04 0.74 5.46 -51.93 -0.28 0.46 16 28 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 29 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.62 5.56 -51.93 -0.29 0.33 16 37 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 LS Contribution 284.23 15.07 4.28 4.28 Total: -1.00 -30.26 284.23 -7.75 -38.00 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -6.55 Total: -3.86 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.09 Total: -18.13 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.37 Total: -37.75 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.26 -7.75 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.574 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds