Wall clock time and date at job start Sun Mar 29 2020 21:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47345 * 120.00100 * 2 1 3 5 5 C 1.50701 * 109.47126 * 185.00289 * 4 2 1 6 6 H 1.07993 * 120.00321 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00010 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47148 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46906 * 119.99947 * 9 7 5 12 12 H 1.48494 * 109.47339 * 239.99763 * 9 7 5 13 13 N 1.46905 * 109.47467 * 240.00495 * 2 1 3 14 14 C 1.48530 * 110.99574 * 311.00848 * 13 2 1 15 15 C 1.54941 * 103.22660 * 159.71893 * 14 13 2 16 16 C 1.54587 * 102.92168 * 322.58687 * 15 14 13 17 17 C 1.53009 * 110.30842 * 263.04024 * 16 15 14 18 18 C 1.53004 * 110.31238 * 140.87239 * 16 15 14 19 19 C 1.47904 * 111.00053 * 68.40340 * 13 2 1 20 20 H 1.09009 * 109.47198 * 67.74640 * 1 2 3 21 21 H 1.08999 * 109.46821 * 187.73968 * 1 2 3 22 22 H 1.08994 * 109.47397 * 307.74101 * 1 2 3 23 23 H 1.09005 * 109.46584 * 65.00318 * 4 2 1 24 24 H 1.09000 * 109.47171 * 305.00133 * 4 2 1 25 25 H 0.96998 * 120.00163 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.66840 * 278.15359 * 14 13 2 27 27 H 1.09006 * 110.66812 * 41.28662 * 14 13 2 28 28 H 1.08996 * 110.72349 * 204.22761 * 15 14 13 29 29 H 1.08999 * 110.87338 * 81.01606 * 15 14 13 30 30 H 1.09000 * 109.46768 * 175.71767 * 17 16 15 31 31 H 1.08997 * 109.46631 * 295.71204 * 17 16 15 32 32 H 1.08990 * 109.47145 * 55.71725 * 17 16 15 33 33 H 1.08998 * 109.46779 * 304.28126 * 18 16 15 34 34 H 1.09004 * 109.46890 * 64.28030 * 18 16 15 35 35 H 1.08995 * 109.47089 * 184.28173 * 18 16 15 36 36 H 1.09003 * 109.91504 * 333.51136 * 19 13 2 37 37 H 1.08994 * 109.91393 * 94.60601 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2305 -1.1935 2.3577 8 7 3.5765 -1.8378 3.2994 9 14 6.0921 -1.0622 2.4361 10 1 6.5838 -0.2926 1.2650 11 1 6.4871 -0.3667 3.6873 12 1 6.6856 -2.4233 2.4179 13 7 2.0197 -0.6924 -1.1995 14 6 1.3393 -2.0011 -1.3736 15 6 1.5589 -2.3180 -2.8743 16 6 1.4310 -0.9301 -3.5430 17 6 0.0155 -0.7323 -4.0895 18 6 2.4600 -0.7846 -4.6659 19 6 1.7173 0.0850 -2.4209 20 1 -0.3634 0.3892 -0.9512 21 1 -0.3633 -1.0183 0.1384 22 1 -0.3634 0.6290 0.8126 23 1 1.7517 -1.7716 1.2054 24 1 1.6054 -0.2618 2.1369 25 1 4.0608 -2.2446 4.0348 26 1 1.8042 -2.7628 -0.7476 27 1 0.2759 -1.9146 -1.1504 28 1 0.7887 -2.9958 -3.2422 29 1 2.5512 -2.7368 -3.0417 30 1 -0.0818 0.2770 -4.4893 31 1 -0.1724 -1.4568 -4.8819 32 1 -0.7073 -0.8763 -3.2865 33 1 3.4589 -0.9654 -4.2689 34 1 2.2448 -1.5085 -5.4519 35 1 2.4094 0.2237 -5.0767 36 1 0.8411 0.7117 -2.2546 37 1 2.5726 0.7059 -2.6871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:40 Heat of formation + Delta-G solvation = -31.243646 kcal Electronic energy + Delta-G solvation = -14900.197572 eV Core-core repulsion = 12675.955732 eV Total energy + Delta-G solvation = -2224.241841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72047 -36.80078 -34.61948 -32.00344 -30.21837 -29.13181 -28.10086 -26.13756 -24.92731 -23.28742 -20.35323 -19.72754 -18.35369 -16.92908 -16.50713 -16.27285 -15.32029 -14.98016 -14.59177 -14.44876 -14.09552 -13.76076 -13.57042 -13.30815 -13.21909 -12.84510 -12.64655 -12.45761 -12.38948 -12.26800 -12.16076 -11.75643 -11.52313 -11.35401 -11.29252 -11.08434 -11.01494 -10.50293 -8.93686 -8.11636 -6.16762 1.39676 1.40454 1.54169 2.46259 3.18664 3.33735 3.67800 3.82620 4.00999 4.19538 4.37639 4.43531 4.48948 4.53566 4.56464 4.69172 4.85400 4.85867 4.91182 4.97613 5.02554 5.10970 5.14553 5.17982 5.23778 5.33075 5.35782 5.42336 5.45999 5.59363 5.69414 5.87833 6.29779 6.34747 6.53931 6.97101 7.49091 9.00790 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038074 B = 0.008576 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.229068 B = 3263.959643 C = 3621.141044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 H 0.059 0.941 4 C 0.040 3.960 5 C -0.501 4.501 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.516 5.516 14 C 0.033 3.967 15 C -0.107 4.107 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.130 4.130 19 C 0.038 3.962 20 H 0.068 0.932 21 H 0.052 0.948 22 H 0.058 0.942 23 H -0.008 1.008 24 H -0.009 1.009 25 H 0.259 0.741 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 1.955 -15.279 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.025 4.025 3 H 0.077 0.923 4 C 0.003 3.997 5 C -0.539 4.539 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.239 5.239 14 C -0.095 4.095 15 C -0.145 4.145 16 C -0.073 4.073 17 C -0.188 4.188 18 C -0.187 4.187 19 C -0.090 4.090 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.761 1.822 -15.058 16.225 hybrid contribution 0.176 -0.005 0.792 0.811 sum -5.585 1.816 -14.266 15.428 Atomic orbital electron populations 1.22381 0.97050 1.01684 1.02013 1.21726 0.92275 0.97115 0.91340 0.92260 1.18971 0.95219 0.94095 0.91436 1.21520 0.93342 1.32413 1.06628 0.92673 1.25884 1.03105 0.95577 0.95680 1.70102 1.37086 1.38036 1.13082 0.85489 0.80397 0.77724 0.77962 1.19048 1.20538 1.20807 1.64809 1.54498 1.03177 1.01425 1.23193 0.97000 0.92097 0.97162 1.22595 1.02062 0.96816 0.93065 1.21408 0.97090 0.94014 0.94822 1.21841 0.93784 1.02450 1.00736 1.21795 0.97496 1.02257 0.97149 1.23104 0.99628 0.96283 0.89950 0.91292 0.92883 0.92306 0.98960 0.99099 0.93215 0.93458 0.92934 0.89527 0.91836 0.91773 0.91080 0.93339 0.93741 0.91300 0.91858 0.93313 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.96 8.17 71.98 0.59 -5.37 16 2 C 0.08 3.59 2.22 44.91 0.10 3.69 16 3 H 0.06 2.59 8.10 -2.39 -0.02 2.57 16 4 C 0.04 2.17 4.46 29.85 0.13 2.30 16 5 C -0.50 -29.55 8.84 25.60 0.23 -29.33 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 8 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 9 Si 0.96 46.67 29.54 68.60 2.03 48.69 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 13 N -0.52 -20.36 4.95 -857.85 -4.25 -24.61 16 14 C 0.03 1.19 5.57 86.65 0.48 1.67 16 15 C -0.11 -2.97 6.16 31.80 0.20 -2.77 16 16 C -0.07 -1.78 0.97 -51.30 -0.05 -1.83 16 17 C -0.13 -2.51 8.21 71.99 0.59 -1.92 16 18 C -0.13 -2.76 8.24 71.98 0.59 -2.16 16 19 C 0.04 1.17 5.76 86.45 0.50 1.67 16 20 H 0.07 2.01 6.28 -2.38 -0.01 1.99 16 21 H 0.05 1.85 6.41 -2.39 -0.02 1.83 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H -0.01 -0.47 7.10 -2.38 -0.02 -0.48 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.05 2.00 7.65 -2.39 -0.02 1.98 16 27 H 0.05 1.77 5.46 -2.38 -0.01 1.75 16 28 H 0.09 1.97 7.85 -2.39 -0.02 1.95 16 29 H 0.06 1.85 7.84 -2.39 -0.02 1.83 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.09 8.11 -2.39 -0.02 1.07 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.40 5.56 -2.39 -0.01 1.39 16 37 H 0.06 2.04 7.69 -2.39 -0.02 2.02 16 Total: -1.00 -66.06 284.23 2.89 -63.17 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.01 Total: 5.55 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 3.82 Total: -33.97 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -3.97 Total: -83.45 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -66.06 2.89 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.930 kcal (2) G-P(sol) polarization free energy of solvation -66.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds