Wall clock time and date at job start Sun Mar 29 2020 21:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47555 * 2 1 4 4 C 1.53005 * 109.46840 * 239.99742 * 2 1 3 5 5 C 1.50706 * 109.47029 * 65.52181 * 4 2 1 6 6 H 1.08003 * 119.99889 * 5.30967 * 5 4 2 7 7 C 1.37875 * 120.00036 * 185.30817 * 5 4 2 8 8 N 1.31508 * 120.00115 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47305 * 89.99763 * 9 7 5 11 11 H 1.48501 * 109.47074 * 209.99616 * 9 7 5 12 12 H 1.48499 * 109.47301 * 329.99817 * 9 7 5 13 13 N 1.46895 * 109.47142 * 120.00279 * 2 1 3 14 14 C 1.48727 * 111.01730 * 180.62557 * 13 2 1 15 15 C 1.54377 * 104.51559 * 158.96413 * 14 13 2 16 16 C 1.54256 * 105.15519 * 336.26726 * 15 14 13 17 17 C 1.52996 * 110.32532 * 118.84432 * 16 15 14 18 18 C 1.53000 * 110.32552 * 241.05773 * 16 15 14 19 19 C 1.48565 * 110.99875 * 296.13098 * 13 2 1 20 20 H 1.09000 * 109.47555 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47322 * 300.00429 * 1 2 3 22 22 H 1.09007 * 109.47155 * 59.99726 * 1 2 3 23 23 H 1.09002 * 109.46835 * 185.52008 * 4 2 1 24 24 H 1.08992 * 109.47193 * 305.52174 * 4 2 1 25 25 H 0.97003 * 120.00163 * 179.97438 * 8 7 5 26 26 H 1.09001 * 110.38600 * 40.23724 * 14 13 2 27 27 H 1.08998 * 110.50786 * 277.74980 * 14 13 2 28 28 H 1.09004 * 110.32097 * 217.31898 * 15 14 13 29 29 H 1.09001 * 110.32380 * 95.21869 * 15 14 13 30 30 H 1.09001 * 109.47153 * 61.45707 * 17 16 15 31 31 H 1.09003 * 109.47418 * 181.45864 * 17 16 15 32 32 H 1.09001 * 109.47136 * 301.45716 * 17 16 15 33 33 H 1.08996 * 109.47143 * 58.54188 * 18 16 15 34 34 H 1.09006 * 109.46748 * 178.54338 * 18 16 15 35 35 H 1.08998 * 109.46850 * 298.54386 * 18 16 15 36 36 H 1.08997 * 110.40794 * 82.18367 * 19 13 2 37 37 H 1.09002 * 110.51047 * 319.79232 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6522 0.0636 -2.4760 6 1 1.1737 1.0262 -2.3722 7 6 1.9085 -0.4472 -3.7307 8 7 1.5698 0.2376 -4.8012 9 14 2.7356 -2.1125 -3.9102 10 1 1.7008 -3.1763 -3.9604 11 1 3.5321 -2.1371 -5.1633 12 1 3.6315 -2.3478 -2.7495 13 7 2.0196 -0.6925 1.1994 14 6 3.5063 -0.6995 1.2417 15 6 3.8499 -0.9397 2.7274 16 6 2.6109 -0.4592 3.5107 17 6 2.0011 -1.6173 4.3031 18 6 2.9880 0.6884 4.4498 19 6 1.6211 0.0330 2.4330 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 3.1254 -0.8077 -1.2012 24 1 1.5981 -1.7164 -1.3000 25 1 1.7505 -0.1216 -5.6840 26 1 3.9000 0.2616 0.9109 27 1 3.9021 -1.5061 0.6247 28 1 4.7268 -0.3580 3.0120 29 1 4.0248 -2.0002 2.9089 30 1 2.7297 -1.9875 5.0243 31 1 1.1128 -1.2690 4.8301 32 1 1.7264 -2.4205 3.6193 33 1 3.4085 1.5095 3.8694 34 1 2.0984 1.0339 4.9766 35 1 3.7255 0.3391 5.1723 36 1 0.5986 -0.2226 2.7108 37 1 1.7179 1.1094 2.2911 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:42 Heat of formation + Delta-G solvation = -17.633597 kcal Electronic energy + Delta-G solvation = -14720.704527 eV Core-core repulsion = 12497.052862 eV Total energy + Delta-G solvation = -2223.651665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31899 -35.43390 -32.64850 -31.03992 -29.15893 -27.29294 -27.01241 -25.39148 -22.54328 -21.48212 -19.15459 -18.63401 -16.93427 -15.36705 -15.01565 -14.34227 -13.94822 -13.74333 -13.39374 -13.19593 -12.91091 -12.55021 -12.29203 -11.91556 -11.68295 -11.53806 -11.33774 -11.03035 -10.80187 -10.69976 -10.49356 -10.44843 -10.33961 -9.96983 -9.75267 -9.47255 -9.12578 -8.50082 -7.89300 -6.01872 -3.99052 3.34081 3.41042 3.46390 4.48311 4.49366 4.68363 4.84348 5.03125 5.32598 5.42398 5.49010 5.54593 5.64955 5.70835 5.78094 5.89988 5.96301 5.97884 6.03278 6.10175 6.15793 6.24915 6.31739 6.36077 6.41343 6.48726 6.65308 6.81726 7.06662 7.19662 7.32738 7.52210 7.67744 7.91042 8.56418 9.02359 9.61113 11.11415 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047989 B = 0.007690 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.331358 B = 3640.113505 C = 3879.034100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.083 3.917 3 H 0.034 0.966 4 C -0.002 4.002 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.509 5.509 14 C 0.036 3.964 15 C -0.116 4.116 16 C -0.073 4.073 17 C -0.131 4.131 18 C -0.137 4.137 19 C 0.042 3.958 20 H 0.053 0.947 21 H 0.032 0.968 22 H 0.070 0.930 23 H 0.013 0.987 24 H 0.020 0.980 25 H 0.262 0.738 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.591 -1.924 16.807 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.024 4.024 3 H 0.052 0.948 4 C -0.040 4.040 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.234 5.234 14 C -0.093 4.093 15 C -0.154 4.154 16 C -0.073 4.073 17 C -0.188 4.188 18 C -0.195 4.195 19 C -0.086 4.086 20 H 0.072 0.928 21 H 0.051 0.949 22 H 0.089 0.911 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.357 -2.465 16.572 16.919 hybrid contribution 0.740 0.040 -0.347 0.819 sum 3.097 -2.425 16.225 16.695 Atomic orbital electron populations 1.21704 0.94853 1.01559 1.00535 1.21802 0.95483 0.95333 0.89819 0.94832 1.19598 0.95880 0.96252 0.92248 1.21094 1.39579 1.05721 0.89035 0.91019 1.24986 0.95233 0.97302 0.95859 1.69911 1.48095 1.38461 0.97903 0.86777 0.80154 0.84884 0.77466 1.20279 1.21546 1.19077 1.65487 1.07540 1.48444 1.01888 1.23049 0.89680 1.00832 0.95698 1.22470 0.96734 1.01277 0.94921 1.21317 0.95456 0.95523 0.95014 1.21801 0.99820 0.97883 0.99303 1.21881 1.01012 0.97666 0.98910 1.23170 0.98803 0.96058 0.90552 0.92825 0.94910 0.91108 0.96834 0.96183 0.92794 0.94016 0.90277 0.91827 0.91328 0.93232 0.93096 0.91826 0.92769 0.92766 0.92770 0.90644 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.96 37.16 0.33 -2.19 16 2 C 0.08 1.74 1.85 -67.72 -0.13 1.61 16 3 H 0.03 0.73 7.98 -51.93 -0.41 0.32 16 4 C 0.00 -0.05 3.51 -27.88 -0.10 -0.15 16 5 C -0.52 -14.75 8.86 -34.44 -0.31 -15.06 16 6 H 0.07 2.19 7.54 -52.48 -0.40 1.80 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 9 Si 0.88 22.20 27.37 -169.99 -4.65 17.54 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.50 6.70 56.52 0.38 -6.13 16 13 N -0.51 -9.15 5.20 -221.88 -1.15 -10.31 16 14 C 0.04 0.59 5.38 -2.09 -0.01 0.58 16 15 C -0.12 -1.52 6.29 -25.35 -0.16 -1.68 16 16 C -0.07 -0.90 1.03 -153.13 -0.16 -1.06 16 17 C -0.13 -1.47 8.23 37.16 0.31 -1.16 16 18 C -0.14 -1.44 8.24 37.16 0.31 -1.13 16 19 C 0.04 0.63 4.59 -2.18 -0.01 0.62 16 20 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.03 0.55 7.04 -51.93 -0.37 0.18 16 22 H 0.07 1.51 7.10 -51.92 -0.37 1.14 16 23 H 0.01 0.33 6.11 -51.93 -0.32 0.02 16 24 H 0.02 0.50 7.27 -51.93 -0.38 0.12 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.04 0.72 7.96 -51.93 -0.41 0.30 16 27 H 0.08 1.38 7.55 -51.93 -0.39 0.99 16 28 H 0.06 0.75 7.71 -51.93 -0.40 0.35 16 29 H 0.07 0.86 7.71 -51.93 -0.40 0.46 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.59 8.12 -51.93 -0.42 0.16 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.10 7.41 -51.93 -0.38 0.71 16 37 H 0.04 0.59 7.62 -51.93 -0.40 0.19 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -30.06 284.16 -7.51 -37.57 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.74 Total: -4.05 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.02 Total: -17.73 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.38 Total: -37.61 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.65 Total: 17.54 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.06 -7.51 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.934 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds