Wall clock time and date at job start Sun Mar 29 2020 21:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47555 * 2 1 4 4 C 1.53005 * 109.46840 * 239.99742 * 2 1 3 5 5 C 1.50706 * 109.47029 * 65.52181 * 4 2 1 6 6 H 1.08003 * 119.99889 * 5.30967 * 5 4 2 7 7 C 1.37875 * 120.00036 * 185.30817 * 5 4 2 8 8 N 1.31508 * 120.00115 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99814 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47305 * 89.99763 * 9 7 5 11 11 H 1.48501 * 109.47074 * 209.99616 * 9 7 5 12 12 H 1.48499 * 109.47301 * 329.99817 * 9 7 5 13 13 N 1.46895 * 109.47142 * 120.00279 * 2 1 3 14 14 C 1.48727 * 111.01730 * 180.62557 * 13 2 1 15 15 C 1.54377 * 104.51559 * 158.96413 * 14 13 2 16 16 C 1.54256 * 105.15519 * 336.26726 * 15 14 13 17 17 C 1.52996 * 110.32532 * 118.84432 * 16 15 14 18 18 C 1.53000 * 110.32552 * 241.05773 * 16 15 14 19 19 C 1.48565 * 110.99875 * 296.13098 * 13 2 1 20 20 H 1.09000 * 109.47555 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47322 * 300.00429 * 1 2 3 22 22 H 1.09007 * 109.47155 * 59.99726 * 1 2 3 23 23 H 1.09002 * 109.46835 * 185.52008 * 4 2 1 24 24 H 1.08992 * 109.47193 * 305.52174 * 4 2 1 25 25 H 0.97003 * 120.00163 * 179.97438 * 8 7 5 26 26 H 1.09001 * 110.38600 * 40.23724 * 14 13 2 27 27 H 1.08998 * 110.50786 * 277.74980 * 14 13 2 28 28 H 1.09004 * 110.32097 * 217.31898 * 15 14 13 29 29 H 1.09001 * 110.32380 * 95.21869 * 15 14 13 30 30 H 1.09001 * 109.47153 * 61.45707 * 17 16 15 31 31 H 1.09003 * 109.47418 * 181.45864 * 17 16 15 32 32 H 1.09001 * 109.47136 * 301.45716 * 17 16 15 33 33 H 1.08996 * 109.47143 * 58.54188 * 18 16 15 34 34 H 1.09006 * 109.46748 * 178.54338 * 18 16 15 35 35 H 1.08998 * 109.46850 * 298.54386 * 18 16 15 36 36 H 1.08997 * 110.40794 * 82.18367 * 19 13 2 37 37 H 1.09002 * 110.51047 * 319.79232 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6522 0.0636 -2.4760 6 1 1.1737 1.0262 -2.3722 7 6 1.9085 -0.4472 -3.7307 8 7 1.5698 0.2376 -4.8012 9 14 2.7356 -2.1125 -3.9102 10 1 1.7008 -3.1763 -3.9604 11 1 3.5321 -2.1371 -5.1633 12 1 3.6315 -2.3478 -2.7495 13 7 2.0196 -0.6925 1.1994 14 6 3.5063 -0.6995 1.2417 15 6 3.8499 -0.9397 2.7274 16 6 2.6109 -0.4592 3.5107 17 6 2.0011 -1.6173 4.3031 18 6 2.9880 0.6884 4.4498 19 6 1.6211 0.0330 2.4330 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 3.1254 -0.8077 -1.2012 24 1 1.5981 -1.7164 -1.3000 25 1 1.7505 -0.1216 -5.6840 26 1 3.9000 0.2616 0.9109 27 1 3.9021 -1.5061 0.6247 28 1 4.7268 -0.3580 3.0120 29 1 4.0248 -2.0002 2.9089 30 1 2.7297 -1.9875 5.0243 31 1 1.1128 -1.2690 4.8301 32 1 1.7264 -2.4205 3.6193 33 1 3.4085 1.5095 3.8694 34 1 2.0984 1.0339 4.9766 35 1 3.7255 0.3391 5.1723 36 1 0.5986 -0.2226 2.7108 37 1 1.7179 1.1094 2.2911 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:42 Heat of formation + Delta-G solvation = -36.924360 kcal Electronic energy + Delta-G solvation = -14721.541038 eV Core-core repulsion = 12497.052862 eV Total energy + Delta-G solvation = -2224.488175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56755 -36.93931 -34.67248 -32.54672 -30.70592 -28.68767 -28.11209 -26.75057 -24.32662 -22.88425 -20.76155 -19.75497 -19.08820 -16.81753 -16.39225 -16.15240 -15.43585 -15.10599 -14.76021 -14.44052 -14.37146 -13.93289 -13.69873 -13.38578 -13.13875 -12.95483 -12.67197 -12.58687 -12.30014 -12.19746 -11.87941 -11.75177 -11.58633 -11.43257 -11.37981 -11.24207 -11.15439 -10.76051 -9.34660 -8.29975 -6.32689 1.34307 1.34857 1.47813 2.34952 3.05323 3.12975 3.63070 3.76987 4.00178 4.22587 4.32012 4.36363 4.46426 4.52049 4.61305 4.71996 4.80758 4.86263 4.88039 4.97770 4.98949 5.07858 5.13869 5.16174 5.22453 5.24020 5.32316 5.34440 5.40863 5.49469 5.57456 5.63288 6.03587 6.19891 6.32268 6.73571 7.31148 8.86547 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047989 B = 0.007690 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.331358 B = 3640.113505 C = 3879.034100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.090 3.910 3 H 0.017 0.983 4 C 0.006 3.994 5 C -0.522 4.522 6 H 0.035 0.965 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.253 1.253 13 N -0.515 5.515 14 C 0.029 3.971 15 C -0.108 4.108 16 C -0.069 4.069 17 C -0.127 4.127 18 C -0.133 4.133 19 C 0.040 3.960 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.043 0.957 23 H 0.012 0.988 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -3.306 19.168 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.018 4.018 3 H 0.035 0.965 4 C -0.032 4.032 5 C -0.561 4.561 6 H 0.053 0.947 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.176 1.176 13 N -0.240 5.240 14 C -0.100 4.100 15 C -0.146 4.146 16 C -0.069 4.069 17 C -0.184 4.184 18 C -0.191 4.191 19 C -0.088 4.088 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.062 0.938 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.132 -3.844 18.958 19.595 hybrid contribution 0.465 0.558 -1.072 1.295 sum 3.597 -3.286 17.886 18.538 Atomic orbital electron populations 1.21597 0.94002 1.01648 1.00638 1.21559 0.96174 0.94103 0.90011 0.96543 1.19466 0.95702 0.95712 0.92321 1.21353 1.38902 1.04802 0.90999 0.94676 1.25908 0.96009 1.01551 0.95427 1.70052 1.49712 1.40645 0.98606 0.85701 0.79436 0.79751 0.78017 1.19246 1.20811 1.17637 1.65434 1.08511 1.48326 1.01692 1.23117 0.88785 0.99754 0.98297 1.22460 0.97741 1.02270 0.92156 1.21340 0.94261 0.96724 0.94622 1.21768 1.00706 0.96778 0.99174 1.21850 1.01925 0.96595 0.98703 1.23291 1.00038 0.95583 0.89915 0.92636 0.92043 0.93752 0.96931 0.96394 0.92500 0.95233 0.91472 0.90130 0.90414 0.91471 0.92066 0.93328 0.93426 0.91824 0.91022 0.90010 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.96 71.98 0.64 -4.10 16 2 C 0.09 3.77 1.85 44.92 0.08 3.86 16 3 H 0.02 0.74 7.98 -2.39 -0.02 0.72 16 4 C 0.01 0.28 3.51 29.85 0.10 0.39 16 5 C -0.52 -30.74 8.86 25.60 0.23 -30.52 16 6 H 0.03 2.26 7.54 -2.91 -0.02 2.24 16 7 C 0.01 0.47 5.47 84.66 0.46 0.93 16 8 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 9 Si 0.95 45.77 27.37 68.60 1.88 47.65 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.25 -11.55 6.70 99.48 0.67 -10.89 16 13 N -0.52 -17.97 5.20 -855.88 -4.45 -22.42 16 14 C 0.03 0.92 5.38 86.42 0.46 1.38 16 15 C -0.11 -2.55 6.29 31.49 0.20 -2.35 16 16 C -0.07 -1.50 1.03 -51.29 -0.05 -1.56 16 17 C -0.13 -2.41 8.23 71.98 0.59 -1.82 16 18 C -0.13 -2.34 8.24 71.98 0.59 -1.75 16 19 C 0.04 1.10 4.59 86.45 0.40 1.50 16 20 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.06 2.01 7.04 -2.39 -0.02 1.99 16 22 H 0.04 1.94 7.10 -2.38 -0.02 1.92 16 23 H 0.01 0.62 6.11 -2.39 -0.01 0.60 16 24 H 0.02 0.88 7.27 -2.39 -0.02 0.87 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 27 H 0.07 2.29 7.55 -2.39 -0.02 2.27 16 28 H 0.08 1.64 7.71 -2.38 -0.02 1.62 16 29 H 0.08 1.71 7.71 -2.39 -0.02 1.69 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 2.17 7.41 -2.39 -0.02 2.16 16 37 H 0.03 0.98 7.62 -2.39 -0.02 0.96 16 Total: -1.00 -65.33 284.16 2.40 -62.93 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.96 Total: 5.93 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.72 Total: -34.02 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -4.15 Total: -82.49 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -65.33 2.40 -62.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.008 kcal (2) G-P(sol) polarization free energy of solvation -65.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds