Wall clock time and date at job start Sun Mar 29 2020 21:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47042 * 120.00566 * 2 1 3 5 5 C 1.50706 * 109.47196 * 185.00039 * 4 2 1 6 6 H 1.07999 * 119.99833 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00039 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99901 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47334 * 59.99573 * 9 7 5 11 11 H 1.48501 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46806 * 299.99283 * 9 7 5 13 13 N 1.46902 * 109.47007 * 240.00196 * 2 1 3 14 14 C 1.48564 * 111.00086 * 67.26444 * 13 2 1 15 15 C 1.54372 * 104.59415 * 200.95955 * 14 13 2 16 16 H 1.08999 * 110.32772 * 264.85048 * 15 14 13 17 17 C 1.53002 * 110.32291 * 142.75035 * 15 14 13 18 18 C 1.54259 * 105.06355 * 23.85190 * 15 14 13 19 19 H 1.08992 * 110.32353 * 241.10180 * 18 15 14 20 20 C 1.53004 * 110.32482 * 118.89697 * 18 15 14 21 21 C 1.48567 * 111.00210 * 311.84655 * 13 2 1 22 22 H 1.08999 * 109.47199 * 187.93285 * 1 2 3 23 23 H 1.08998 * 109.46852 * 307.93167 * 1 2 3 24 24 H 1.08998 * 109.46870 * 67.93057 * 1 2 3 25 25 H 1.08999 * 109.47197 * 305.00031 * 4 2 1 26 26 H 1.09000 * 109.47311 * 65.00046 * 4 2 1 27 27 H 0.97000 * 119.99926 * 180.02562 * 8 7 5 28 28 H 1.08995 * 110.41075 * 82.17736 * 14 13 2 29 29 H 1.09000 * 110.50811 * 319.79167 * 14 13 2 30 30 H 1.09000 * 109.47383 * 61.45144 * 17 15 14 31 31 H 1.08999 * 109.47227 * 181.45711 * 17 15 14 32 32 H 1.09005 * 109.46659 * 301.44995 * 17 15 14 33 33 H 1.09002 * 109.47390 * 59.99863 * 20 18 15 34 34 H 1.08994 * 109.47209 * 180.02562 * 20 18 15 35 35 H 1.09010 * 109.46685 * 300.00220 * 20 18 15 36 36 H 1.08999 * 110.40530 * 277.81599 * 21 13 2 37 37 H 1.08995 * 110.40842 * 40.14299 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1938 2.3577 8 7 3.5764 -1.8382 3.2993 9 14 6.0922 -1.0625 2.4360 10 1 6.4856 0.3682 2.4957 11 1 6.5871 -1.7626 3.6485 12 1 6.6838 -1.6885 1.2263 13 7 2.0196 -0.6925 -1.1995 14 6 1.6917 0.0751 -2.4285 15 6 1.7575 -0.9661 -3.5664 16 1 2.7391 -0.9481 -4.0398 17 6 0.6645 -0.6918 -4.6014 18 6 1.5161 -2.3262 -2.8798 19 1 2.3798 -2.9770 -3.0149 20 6 0.2568 -2.9891 -3.4417 21 6 1.3247 -1.9925 -1.3848 22 1 -0.3633 -1.0178 0.1418 23 1 -0.3633 0.6317 0.8106 24 1 -0.3633 0.3861 -0.9524 25 1 1.6053 -0.2620 2.1369 26 1 1.7516 -1.7716 1.2054 27 1 4.0608 -2.2450 4.0347 28 1 2.4264 0.8635 -2.5916 29 1 0.6899 0.4988 -2.3582 30 1 0.8190 0.2938 -5.0406 31 1 0.7070 -1.4492 -5.3841 32 1 -0.3113 -0.7247 -4.1167 33 1 0.3771 -3.1480 -4.5134 34 1 0.0993 -3.9476 -2.9473 35 1 -0.6035 -2.3435 -3.2646 36 1 1.7833 -2.7606 -0.7621 37 1 0.2654 -1.8943 -1.1479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:39 Heat of formation + Delta-G solvation = -8.693229 kcal Electronic energy + Delta-G solvation = -14883.850135 eV Core-core repulsion = 12660.586153 eV Total energy + Delta-G solvation = -2223.263981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34937 -35.26749 -32.51099 -30.52741 -30.08727 -27.30286 -25.49478 -25.19592 -23.12204 -21.38566 -19.02285 -18.28787 -16.11342 -15.96614 -15.23216 -14.40286 -13.92091 -13.76773 -13.37838 -13.21344 -12.58975 -12.11280 -11.98393 -11.74922 -11.63657 -11.41839 -11.22190 -11.03651 -10.75649 -10.59896 -10.41999 -10.26861 -10.19616 -9.91500 -9.83496 -9.13012 -8.95958 -8.21788 -7.51177 -5.84479 -3.82116 3.43958 3.47108 3.51333 4.59744 4.67739 4.91458 4.94243 5.22256 5.45878 5.52082 5.55922 5.64653 5.71939 5.74125 5.82071 5.95814 5.98218 6.00589 6.04106 6.09628 6.14453 6.20745 6.37887 6.47839 6.54291 6.63610 6.68094 6.80914 7.04313 7.54586 7.65560 7.88037 8.06108 8.17019 8.63297 9.23483 9.79230 11.27624 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038613 B = 0.008246 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.974488 B = 3394.655240 C = 3561.938981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.075 3.925 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.490 4.490 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.481 5.481 14 C 0.028 3.972 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.143 4.143 18 C -0.095 4.095 19 H 0.074 0.926 20 C -0.142 4.142 21 C 0.035 3.965 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.257 0.743 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 0.793 -12.977 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 H 0.086 0.914 4 C -0.004 4.004 5 C -0.529 4.529 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.203 5.203 14 C -0.100 4.100 15 C -0.112 4.112 16 H 0.092 0.908 17 C -0.200 4.200 18 C -0.114 4.114 19 H 0.093 0.907 20 C -0.200 4.200 21 C -0.093 4.093 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.158 0.643 -12.718 14.145 hybrid contribution 0.180 0.148 0.121 0.262 sum -5.978 0.791 -12.597 13.966 Atomic orbital electron populations 1.22530 0.99838 1.01560 1.00418 1.22033 0.90122 0.98543 0.92687 0.91369 1.19118 0.96282 0.95262 0.89691 1.21149 0.91869 1.32930 1.06903 0.92255 1.25005 0.98016 0.95896 0.96004 1.69959 1.35281 1.36999 1.12381 0.86687 0.86393 0.77975 0.77061 1.20523 1.21655 1.20370 1.65621 1.52071 1.02046 1.00585 1.23230 0.99103 0.96587 0.91077 1.21881 0.98928 0.94970 0.95382 0.90827 1.21934 0.98783 1.00756 0.98546 1.21919 0.97986 0.96147 0.95323 0.90720 1.21930 0.97589 1.00156 1.00318 1.23220 0.97326 0.94026 0.94750 0.92560 0.92675 0.93895 0.96480 0.96468 0.93306 0.91120 0.94279 0.93251 0.92673 0.92593 0.92738 0.93030 0.92730 0.90062 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.16 37.16 0.30 -2.97 16 2 C 0.07 1.58 2.29 -67.71 -0.15 1.42 16 3 H 0.07 1.47 8.11 -51.93 -0.42 1.05 16 4 C 0.03 0.88 4.46 -27.88 -0.12 0.75 16 5 C -0.49 -14.14 8.84 -34.44 -0.30 -14.44 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.91 -27.82 13.29 55.43 0.74 -27.08 16 9 Si 0.89 22.52 29.54 -169.99 -5.02 17.50 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.48 -9.54 5.06 -222.03 -1.12 -10.66 16 14 C 0.03 0.46 5.88 -2.18 -0.01 0.44 16 15 C -0.09 -1.28 3.65 -89.24 -0.33 -1.61 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.14 -1.58 7.92 37.16 0.29 -1.29 16 18 C -0.09 -1.38 3.65 -89.24 -0.33 -1.71 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.14 -1.69 7.94 37.16 0.29 -1.40 16 21 C 0.03 0.62 5.08 -2.18 -0.01 0.61 16 22 H 0.06 1.00 6.40 -51.93 -0.33 0.67 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.67 6.11 -51.93 -0.32 0.36 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.48 7.14 -51.93 -0.37 0.10 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.60 5.71 -51.93 -0.30 0.30 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.55 6.97 -51.93 -0.36 0.18 16 32 H 0.06 0.62 6.62 -51.93 -0.34 0.28 16 33 H 0.05 0.56 6.88 -51.93 -0.36 0.21 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.63 6.68 -51.92 -0.35 0.29 16 36 H 0.08 1.66 7.67 -51.93 -0.40 1.26 16 37 H 0.05 0.78 5.07 -51.93 -0.26 0.52 16 LS Contribution 278.95 15.07 4.20 4.20 Total: -1.00 -30.31 278.95 -7.98 -38.29 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -6.31 Total: -3.44 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.46 Total: -18.80 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.39 Total: -37.75 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.31 -7.98 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.593 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds