Wall clock time and date at job start Sun Mar 29 2020 21:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47375 * 2 1 4 4 C 1.52998 * 109.47042 * 120.00566 * 2 1 3 5 5 C 1.50706 * 109.47196 * 185.00039 * 4 2 1 6 6 H 1.07999 * 119.99833 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00039 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99901 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47334 * 59.99573 * 9 7 5 11 11 H 1.48501 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46806 * 299.99283 * 9 7 5 13 13 N 1.46902 * 109.47007 * 240.00196 * 2 1 3 14 14 C 1.48564 * 111.00086 * 67.26444 * 13 2 1 15 15 C 1.54372 * 104.59415 * 200.95955 * 14 13 2 16 16 H 1.08999 * 110.32772 * 264.85048 * 15 14 13 17 17 C 1.53002 * 110.32291 * 142.75035 * 15 14 13 18 18 C 1.54259 * 105.06355 * 23.85190 * 15 14 13 19 19 H 1.08992 * 110.32353 * 241.10180 * 18 15 14 20 20 C 1.53004 * 110.32482 * 118.89697 * 18 15 14 21 21 C 1.48567 * 111.00210 * 311.84655 * 13 2 1 22 22 H 1.08999 * 109.47199 * 187.93285 * 1 2 3 23 23 H 1.08998 * 109.46852 * 307.93167 * 1 2 3 24 24 H 1.08998 * 109.46870 * 67.93057 * 1 2 3 25 25 H 1.08999 * 109.47197 * 305.00031 * 4 2 1 26 26 H 1.09000 * 109.47311 * 65.00046 * 4 2 1 27 27 H 0.97000 * 119.99926 * 180.02562 * 8 7 5 28 28 H 1.08995 * 110.41075 * 82.17736 * 14 13 2 29 29 H 1.09000 * 110.50811 * 319.79167 * 14 13 2 30 30 H 1.09000 * 109.47383 * 61.45144 * 17 15 14 31 31 H 1.08999 * 109.47227 * 181.45711 * 17 15 14 32 32 H 1.09005 * 109.46659 * 301.44995 * 17 15 14 33 33 H 1.09002 * 109.47390 * 59.99863 * 20 18 15 34 34 H 1.08994 * 109.47209 * 180.02562 * 20 18 15 35 35 H 1.09010 * 109.46685 * 300.00220 * 20 18 15 36 36 H 1.08999 * 110.40530 * 277.81599 * 21 13 2 37 37 H 1.08995 * 110.40842 * 40.14299 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1938 2.3577 8 7 3.5764 -1.8382 3.2993 9 14 6.0922 -1.0625 2.4360 10 1 6.4856 0.3682 2.4957 11 1 6.5871 -1.7626 3.6485 12 1 6.6838 -1.6885 1.2263 13 7 2.0196 -0.6925 -1.1995 14 6 1.6917 0.0751 -2.4285 15 6 1.7575 -0.9661 -3.5664 16 1 2.7391 -0.9481 -4.0398 17 6 0.6645 -0.6918 -4.6014 18 6 1.5161 -2.3262 -2.8798 19 1 2.3798 -2.9770 -3.0149 20 6 0.2568 -2.9891 -3.4417 21 6 1.3247 -1.9925 -1.3848 22 1 -0.3633 -1.0178 0.1418 23 1 -0.3633 0.6317 0.8106 24 1 -0.3633 0.3861 -0.9524 25 1 1.6053 -0.2620 2.1369 26 1 1.7516 -1.7716 1.2054 27 1 4.0608 -2.2450 4.0347 28 1 2.4264 0.8635 -2.5916 29 1 0.6899 0.4988 -2.3582 30 1 0.8190 0.2938 -5.0406 31 1 0.7070 -1.4492 -5.3841 32 1 -0.3113 -0.7247 -4.1167 33 1 0.3771 -3.1480 -4.5134 34 1 0.0993 -3.9476 -2.9473 35 1 -0.6035 -2.3435 -3.2646 36 1 1.7833 -2.7606 -0.7621 37 1 0.2654 -1.8943 -1.1479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:39 Heat of formation + Delta-G solvation = -27.745965 kcal Electronic energy + Delta-G solvation = -14884.676323 eV Core-core repulsion = 12660.586153 eV Total energy + Delta-G solvation = -2224.090170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70593 -36.77892 -34.61467 -31.82457 -31.47559 -29.23079 -26.71083 -26.41213 -25.05647 -22.89735 -20.47754 -19.62703 -18.35808 -17.17252 -16.76119 -16.45454 -15.28116 -14.83790 -14.79741 -14.71990 -13.97298 -13.81284 -13.54481 -13.23447 -13.14081 -12.69942 -12.62142 -12.46757 -12.44273 -12.23423 -12.20114 -11.66695 -11.49226 -11.36242 -11.13295 -11.06058 -11.00421 -10.49989 -9.01266 -8.11928 -6.17454 1.39567 1.43092 1.50649 2.45860 3.17912 3.32461 3.73648 3.77792 4.08072 4.16957 4.36090 4.42206 4.49311 4.58831 4.61629 4.69088 4.70367 4.82798 4.87981 4.91840 5.02921 5.09557 5.17080 5.20833 5.22292 5.34617 5.39697 5.44291 5.47007 5.61838 5.68909 5.86738 6.25179 6.31783 6.51863 6.95936 7.48360 9.00118 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038613 B = 0.008246 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.974488 B = 3394.655240 C = 3561.938981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.061 0.939 4 C 0.041 3.959 5 C -0.504 4.504 6 H 0.055 0.945 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.512 5.512 14 C 0.029 3.971 15 C -0.088 4.088 16 H 0.072 0.928 17 C -0.136 4.136 18 C -0.091 4.091 19 H 0.065 0.935 20 C -0.136 4.136 21 C 0.035 3.965 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.070 0.930 25 H -0.009 1.009 26 H -0.010 1.010 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 1.321 -15.101 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.027 4.027 3 H 0.080 0.920 4 C 0.003 3.997 5 C -0.543 4.543 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.235 5.235 14 C -0.098 4.098 15 C -0.107 4.107 16 H 0.091 0.909 17 C -0.193 4.193 18 C -0.110 4.110 19 H 0.083 0.917 20 C -0.193 4.193 21 C -0.093 4.093 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.413 1.180 -14.859 16.227 hybrid contribution 0.266 -0.022 0.804 0.847 sum -6.147 1.158 -14.055 15.384 Atomic orbital electron populations 1.22384 0.97011 1.01680 1.02134 1.21720 0.92369 0.97244 0.91341 0.92046 1.18960 0.95210 0.94006 0.91485 1.21472 0.93360 1.32684 1.06753 0.92642 1.25889 1.03161 0.95510 0.95637 1.70091 1.37264 1.37881 1.13028 0.85596 0.80255 0.78476 0.77244 1.19356 1.21010 1.19814 1.65460 1.53326 1.03235 1.01469 1.23296 0.99671 0.96857 0.90018 1.21876 1.00255 0.93346 0.95191 0.90928 1.21887 0.97529 1.01964 0.97943 1.21899 0.99252 0.96910 0.92980 0.91687 1.21887 0.96078 0.99873 1.01469 1.23176 0.97064 0.92317 0.96693 0.92934 0.92215 0.91133 0.99064 0.99131 0.93183 0.91342 0.92933 0.92194 0.91009 0.92201 0.90505 0.93134 0.92010 0.93964 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 8.16 71.98 0.59 -5.40 16 2 C 0.08 3.51 2.29 44.91 0.10 3.61 16 3 H 0.06 2.67 8.11 -2.39 -0.02 2.65 16 4 C 0.04 2.21 4.46 29.85 0.13 2.35 16 5 C -0.50 -29.88 8.84 25.60 0.23 -29.65 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 8 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16 9 Si 0.96 46.72 29.54 68.60 2.03 48.74 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 13 N -0.51 -20.32 5.06 -856.36 -4.33 -24.66 16 14 C 0.03 0.89 5.88 86.45 0.51 1.40 16 15 C -0.09 -2.21 3.65 -9.90 -0.04 -2.25 16 16 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 17 C -0.14 -2.47 7.92 71.98 0.57 -1.90 16 18 C -0.09 -2.54 3.65 -9.90 -0.04 -2.57 16 19 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 20 C -0.14 -2.85 7.94 71.98 0.57 -2.28 16 21 C 0.04 1.28 5.08 86.45 0.44 1.72 16 22 H 0.05 1.84 6.40 -2.39 -0.02 1.82 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.07 2.04 6.11 -2.39 -0.01 2.02 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.57 7.14 -2.39 -0.02 -0.59 16 27 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.46 5.71 -2.39 -0.01 1.45 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.10 6.97 -2.39 -0.02 1.08 16 32 H 0.06 1.07 6.62 -2.38 -0.02 1.05 16 33 H 0.08 1.29 6.88 -2.39 -0.02 1.28 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.22 6.68 -2.38 -0.02 1.21 16 36 H 0.04 1.81 7.67 -2.39 -0.02 1.80 16 37 H 0.05 1.83 5.07 -2.39 -0.01 1.82 16 Total: -1.00 -66.47 278.95 2.52 -63.95 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.02 Total: 5.85 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.53 Total: -34.87 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -4.05 Total: -83.67 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -66.47 2.52 -63.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.199 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds