Wall clock time and date at job start Sun Mar 29 2020 21:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 C 1.52994 * 109.47312 * 239.99784 * 2 1 3 5 5 C 1.50705 * 109.47089 * 175.81915 * 4 2 1 6 6 H 1.07994 * 120.00281 * 354.99021 * 5 4 2 7 7 C 1.37883 * 119.99677 * 174.98723 * 5 4 2 8 8 N 1.31510 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99692 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46866 * 90.00211 * 9 7 5 11 11 H 1.48497 * 109.47271 * 210.00032 * 9 7 5 12 12 H 1.48498 * 109.47177 * 330.00584 * 9 7 5 13 13 N 1.46902 * 109.46616 * 119.99730 * 2 1 3 14 14 C 1.47443 * 111.00230 * 59.63257 * 13 2 1 15 15 C 1.54321 * 107.22961 * 236.74122 * 14 13 2 16 16 H 1.09003 * 110.70644 * 96.09634 * 15 14 13 17 17 C 1.52994 * 110.70284 * 219.32926 * 15 14 13 18 18 C 1.55144 * 103.01944 * 337.71238 * 15 14 13 19 19 H 1.09002 * 110.98953 * 277.56610 * 18 15 14 20 20 C 1.53002 * 110.99155 * 153.74732 * 18 15 14 21 21 C 1.47838 * 111.00388 * 298.77955 * 13 2 1 22 22 H 1.09004 * 109.47172 * 306.23720 * 1 2 3 23 23 H 1.09009 * 109.47056 * 66.23700 * 1 2 3 24 24 H 1.09001 * 109.47203 * 186.23311 * 1 2 3 25 25 H 1.08997 * 109.47249 * 295.82028 * 4 2 1 26 26 H 1.08997 * 109.47015 * 55.81902 * 4 2 1 27 27 H 0.97001 * 119.99716 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.89327 * 117.33482 * 14 13 2 29 29 H 1.09005 * 109.88486 * 356.13888 * 14 13 2 30 30 H 1.08999 * 109.47219 * 58.54643 * 17 15 14 31 31 H 1.09006 * 109.47221 * 178.54166 * 17 15 14 32 32 H 1.09000 * 109.47392 * 298.54268 * 17 15 14 33 33 H 1.09000 * 109.46725 * 59.99937 * 20 18 15 34 34 H 1.08999 * 109.46657 * 179.97438 * 20 18 15 35 35 H 1.09000 * 109.46897 * 300.00123 * 20 18 15 36 36 H 1.09009 * 110.37254 * 27.54177 * 21 13 2 37 37 H 1.08998 * 110.47668 * 265.24917 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5435 -0.6322 -1.3020 6 1 4.0758 -0.0454 -0.5681 7 6 4.2394 -1.2999 -2.2873 8 7 3.5912 -2.0142 -3.1813 9 14 6.1029 -1.1889 -2.3533 10 1 6.6930 -2.2833 -1.5412 11 1 6.5570 -1.3173 -3.7613 12 1 6.5402 0.1219 -1.8096 13 7 2.0195 -0.6925 1.1995 14 6 1.5395 -2.0861 1.2381 15 6 0.7777 -2.2705 2.5674 16 1 -0.2938 -2.1357 2.4194 17 6 1.0730 -3.6436 3.1741 18 6 1.3545 -1.1406 3.4605 19 1 2.2998 -1.4431 3.9109 20 6 0.3475 -0.7223 4.5338 21 6 1.5696 -0.0053 2.4288 22 1 -0.3634 0.6075 0.8289 23 1 -0.3634 0.4141 -0.9406 24 1 -0.3634 -1.0216 0.1116 25 1 1.7391 -1.7682 -1.2125 26 1 1.6168 -0.2526 -2.1375 27 1 4.0808 -2.4836 -3.8747 28 1 2.3862 -2.7712 1.1979 29 1 0.8698 -2.2709 0.3982 30 1 2.1454 -3.7438 3.3416 31 1 0.5463 -3.7424 4.1233 32 1 0.7378 -4.4229 2.4897 33 1 0.1110 -1.5797 5.1639 34 1 0.7773 0.0705 5.1459 35 1 -0.5630 -0.3601 4.0563 36 1 0.6343 0.5242 2.2468 37 1 2.3346 0.6870 2.7803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:40 Heat of formation + Delta-G solvation = -14.219943 kcal Electronic energy + Delta-G solvation = -14890.048463 eV Core-core repulsion = 12666.544825 eV Total energy + Delta-G solvation = -2223.503638 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28886 -34.99552 -32.43323 -30.98224 -29.90590 -27.31913 -25.86120 -24.80117 -22.84445 -21.00009 -19.74248 -18.43229 -16.19770 -15.84931 -14.82075 -14.42365 -13.84971 -13.54911 -13.27635 -13.11503 -12.60898 -12.27156 -12.02575 -11.86335 -11.65164 -11.42457 -11.28258 -11.08259 -10.75228 -10.60054 -10.39893 -10.31080 -10.24513 -9.99874 -9.82251 -9.07674 -8.95912 -8.21869 -7.34937 -5.85123 -3.82566 3.42161 3.47609 3.52257 4.59513 4.70381 4.83454 4.97586 5.13233 5.51866 5.53410 5.58717 5.68295 5.69822 5.76535 5.88897 5.92167 5.97959 6.03151 6.07613 6.12544 6.20226 6.24263 6.38456 6.47579 6.59549 6.62078 6.72109 6.85966 7.04639 7.59305 7.75957 7.93134 8.09154 8.17553 8.62544 9.23158 9.78772 11.26953 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.008471 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.486748 B = 3304.701016 C = 3470.453500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.502 5.502 14 C 0.053 3.947 15 C -0.113 4.113 16 H 0.067 0.933 17 C -0.137 4.137 18 C -0.098 4.098 19 H 0.080 0.920 20 C -0.138 4.138 21 C 0.039 3.961 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.023 0.977 26 H 0.014 0.986 27 H 0.257 0.743 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 0.620 12.411 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.029 4.029 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.224 5.224 14 C -0.075 4.075 15 C -0.132 4.132 16 H 0.086 0.914 17 C -0.195 4.195 18 C -0.117 4.117 19 H 0.098 0.902 20 C -0.196 4.196 21 C -0.089 4.089 22 H 0.060 0.940 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.205 0.534 12.209 13.705 hybrid contribution 0.132 -0.017 -0.152 0.202 sum -6.073 0.517 12.056 13.509 Atomic orbital electron populations 1.22565 0.99930 1.01052 1.00809 1.22023 0.89906 0.98534 0.92413 0.91401 1.19234 0.96388 0.95561 0.89746 1.21174 0.91681 1.28678 1.11180 0.92223 1.25000 0.98031 0.95867 0.96007 1.69966 1.35138 1.32890 1.16594 0.86625 0.86462 0.78330 0.76719 1.20923 1.21636 1.20032 1.63702 1.56834 1.01092 1.00807 1.22822 0.98092 0.91543 0.95002 1.22495 0.99447 0.94929 0.96322 0.91427 1.21708 1.01657 0.96257 0.99883 1.22343 0.98755 0.95481 0.95148 0.90184 1.21706 0.98770 1.00793 0.98346 1.23160 0.98712 0.96329 0.90713 0.93964 0.92585 0.92949 0.95869 0.96766 0.93370 0.90813 0.92206 0.92399 0.93276 0.92747 0.92874 0.92841 0.92994 0.93838 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.59 37.16 0.32 -2.96 16 2 C 0.08 1.68 2.33 -67.72 -0.16 1.52 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.03 0.72 4.28 -27.88 -0.12 0.60 16 5 C -0.49 -14.02 8.82 -34.44 -0.30 -14.33 16 6 H 0.06 1.72 7.75 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.50 -9.97 4.89 -223.30 -1.09 -11.06 16 14 C 0.05 0.99 5.04 -2.83 -0.01 0.98 16 15 C -0.11 -1.63 3.01 -88.80 -0.27 -1.90 16 16 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 17 C -0.14 -1.74 9.13 37.15 0.34 -1.40 16 18 C -0.10 -1.35 3.08 -88.48 -0.27 -1.62 16 19 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 20 C -0.14 -1.53 9.31 37.16 0.35 -1.19 16 21 C 0.04 0.62 5.96 -2.30 -0.01 0.61 16 22 H 0.04 0.66 6.29 -51.93 -0.33 0.33 16 23 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 24 H 0.05 0.92 6.15 -51.93 -0.32 0.60 16 25 H 0.02 0.64 6.41 -51.93 -0.33 0.31 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.07 1.50 7.82 -51.93 -0.41 1.09 16 29 H 0.06 1.19 4.82 -51.93 -0.25 0.94 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.04 0.67 5.55 -51.92 -0.29 0.38 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 284.54 15.07 4.29 4.29 Total: -1.00 -30.06 284.54 -7.85 -37.91 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.52 Total: -3.34 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -0.24 Total: -18.31 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.36 Total: -38.00 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.06 -7.85 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.694 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds