Wall clock time and date at job start Sun Mar 29 2020 21:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47087 * 2 1 4 4 C 1.52994 * 109.47312 * 239.99784 * 2 1 3 5 5 C 1.50705 * 109.47089 * 175.81915 * 4 2 1 6 6 H 1.07994 * 120.00281 * 354.99021 * 5 4 2 7 7 C 1.37883 * 119.99677 * 174.98723 * 5 4 2 8 8 N 1.31510 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99692 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46866 * 90.00211 * 9 7 5 11 11 H 1.48497 * 109.47271 * 210.00032 * 9 7 5 12 12 H 1.48498 * 109.47177 * 330.00584 * 9 7 5 13 13 N 1.46902 * 109.46616 * 119.99730 * 2 1 3 14 14 C 1.47443 * 111.00230 * 59.63257 * 13 2 1 15 15 C 1.54321 * 107.22961 * 236.74122 * 14 13 2 16 16 H 1.09003 * 110.70644 * 96.09634 * 15 14 13 17 17 C 1.52994 * 110.70284 * 219.32926 * 15 14 13 18 18 C 1.55144 * 103.01944 * 337.71238 * 15 14 13 19 19 H 1.09002 * 110.98953 * 277.56610 * 18 15 14 20 20 C 1.53002 * 110.99155 * 153.74732 * 18 15 14 21 21 C 1.47838 * 111.00388 * 298.77955 * 13 2 1 22 22 H 1.09004 * 109.47172 * 306.23720 * 1 2 3 23 23 H 1.09009 * 109.47056 * 66.23700 * 1 2 3 24 24 H 1.09001 * 109.47203 * 186.23311 * 1 2 3 25 25 H 1.08997 * 109.47249 * 295.82028 * 4 2 1 26 26 H 1.08997 * 109.47015 * 55.81902 * 4 2 1 27 27 H 0.97001 * 119.99716 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.89327 * 117.33482 * 14 13 2 29 29 H 1.09005 * 109.88486 * 356.13888 * 14 13 2 30 30 H 1.08999 * 109.47219 * 58.54643 * 17 15 14 31 31 H 1.09006 * 109.47221 * 178.54166 * 17 15 14 32 32 H 1.09000 * 109.47392 * 298.54268 * 17 15 14 33 33 H 1.09000 * 109.46725 * 59.99937 * 20 18 15 34 34 H 1.08999 * 109.46657 * 179.97438 * 20 18 15 35 35 H 1.09000 * 109.46897 * 300.00123 * 20 18 15 36 36 H 1.09009 * 110.37254 * 27.54177 * 21 13 2 37 37 H 1.08998 * 110.47668 * 265.24917 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5435 -0.6322 -1.3020 6 1 4.0758 -0.0454 -0.5681 7 6 4.2394 -1.2999 -2.2873 8 7 3.5912 -2.0142 -3.1813 9 14 6.1029 -1.1889 -2.3533 10 1 6.6930 -2.2833 -1.5412 11 1 6.5570 -1.3173 -3.7613 12 1 6.5402 0.1219 -1.8096 13 7 2.0195 -0.6925 1.1995 14 6 1.5395 -2.0861 1.2381 15 6 0.7777 -2.2705 2.5674 16 1 -0.2938 -2.1357 2.4194 17 6 1.0730 -3.6436 3.1741 18 6 1.3545 -1.1406 3.4605 19 1 2.2998 -1.4431 3.9109 20 6 0.3475 -0.7223 4.5338 21 6 1.5696 -0.0053 2.4288 22 1 -0.3634 0.6075 0.8289 23 1 -0.3634 0.4141 -0.9406 24 1 -0.3634 -1.0216 0.1116 25 1 1.7391 -1.7682 -1.2125 26 1 1.6168 -0.2526 -2.1375 27 1 4.0808 -2.4836 -3.8747 28 1 2.3862 -2.7712 1.1979 29 1 0.8698 -2.2709 0.3982 30 1 2.1454 -3.7438 3.3416 31 1 0.5463 -3.7424 4.1233 32 1 0.7378 -4.4229 2.4897 33 1 0.1110 -1.5797 5.1639 34 1 0.7773 0.0705 5.1459 35 1 -0.5630 -0.3601 4.0563 36 1 0.6343 0.5242 2.2468 37 1 2.3346 0.6870 2.7803 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015547.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:40 Heat of formation + Delta-G solvation = -32.765602 kcal Electronic energy + Delta-G solvation = -14890.852663 eV Core-core repulsion = 12666.544825 eV Total energy + Delta-G solvation = -2224.307838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68391 -36.54190 -34.51680 -32.12134 -31.45126 -29.21760 -27.13260 -26.14053 -24.77694 -22.41548 -20.93209 -20.04693 -18.39105 -17.34388 -16.54445 -16.06801 -15.20130 -14.97313 -14.64655 -14.36376 -13.99209 -13.80276 -13.58279 -13.24489 -13.10983 -12.95019 -12.76889 -12.62485 -12.41475 -12.29311 -12.18909 -11.67174 -11.55087 -11.39462 -11.24092 -11.07412 -10.93766 -10.48827 -8.86346 -8.11543 -6.16705 1.39965 1.41406 1.52310 2.46096 3.18291 3.32292 3.68776 3.80015 3.95493 4.20572 4.38750 4.46501 4.52406 4.57279 4.60381 4.68541 4.71501 4.82035 4.90824 4.98107 5.03593 5.13379 5.17209 5.19925 5.23516 5.24746 5.35963 5.44230 5.47507 5.59815 5.70830 5.88614 6.32515 6.40045 6.56802 6.96641 7.48958 9.00498 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036617 B = 0.008471 C = 0.008066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.486748 B = 3304.701016 C = 3470.453500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.502 4.502 6 H 0.054 0.946 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.529 5.529 14 C 0.054 3.946 15 C -0.103 4.103 16 H 0.078 0.922 17 C -0.134 4.134 18 C -0.090 4.090 19 H 0.076 0.924 20 C -0.132 4.132 21 C 0.037 3.963 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.051 0.949 25 H -0.001 1.001 26 H -0.011 1.011 27 H 0.259 0.741 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 1.058 14.479 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.252 5.252 14 C -0.074 4.074 15 C -0.122 4.122 16 H 0.097 0.903 17 C -0.192 4.192 18 C -0.109 4.109 19 H 0.094 0.906 20 C -0.189 4.189 21 C -0.090 4.090 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.017 0.983 26 H 0.007 0.993 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.513 0.982 14.293 15.738 hybrid contribution 0.234 -0.153 -0.819 0.866 sum -6.279 0.829 13.474 14.888 Atomic orbital electron populations 1.22416 0.97118 1.01666 1.01994 1.21711 0.92130 0.97230 0.91014 0.92098 1.19088 0.95268 0.94450 0.91463 1.21475 0.93176 1.28423 1.10946 0.92734 1.25860 1.03065 0.95515 0.95644 1.70092 1.37085 1.33743 1.17278 0.85555 0.80457 0.78660 0.76985 1.20348 1.20940 1.19097 1.63535 1.58113 1.01841 1.01704 1.22723 0.97085 0.90546 0.97012 1.22436 0.99304 0.96457 0.94007 0.90345 1.21686 1.01562 0.94970 1.00959 1.22314 0.99528 0.93938 0.95136 0.90595 1.21661 0.97902 1.01817 0.97539 1.23246 0.99128 0.97011 0.89590 0.91137 0.92623 0.92955 0.98305 0.99268 0.93217 0.93648 0.94174 0.93134 0.90637 0.92913 0.91345 0.91710 0.92563 0.92664 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.59 71.98 0.62 -5.37 16 2 C 0.09 3.74 2.33 44.91 0.10 3.85 16 3 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 4 C 0.03 1.86 4.28 29.85 0.13 1.99 16 5 C -0.50 -29.55 8.82 25.60 0.23 -29.32 16 6 H 0.05 3.20 7.75 -2.91 -0.02 3.18 16 7 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.90 13.29 21.45 0.28 -58.61 16 9 Si 0.96 46.61 29.54 68.60 2.03 48.63 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.53 -21.02 4.89 -860.39 -4.21 -25.23 16 14 C 0.05 2.05 5.04 86.65 0.44 2.49 16 15 C -0.10 -2.79 3.01 -9.61 -0.03 -2.82 16 16 H 0.08 2.00 8.04 -2.39 -0.02 1.98 16 17 C -0.13 -3.13 9.13 71.98 0.66 -2.47 16 18 C -0.09 -2.25 3.08 -9.41 -0.03 -2.28 16 19 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 20 C -0.13 -2.39 9.31 71.98 0.67 -1.72 16 21 C 0.04 1.14 5.96 86.77 0.52 1.66 16 22 H 0.07 2.04 6.29 -2.39 -0.02 2.02 16 23 H 0.05 1.90 8.14 -2.38 -0.02 1.89 16 24 H 0.05 1.80 6.15 -2.39 -0.01 1.79 16 25 H 0.00 -0.08 6.41 -2.39 -0.02 -0.09 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.05 1.92 7.82 -2.39 -0.02 1.90 16 29 H 0.04 1.64 4.82 -2.38 -0.01 1.63 16 30 H 0.05 1.24 8.13 -2.39 -0.02 1.23 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.99 8.07 -2.39 -0.02 0.98 16 36 H 0.06 1.55 5.55 -2.38 -0.01 1.54 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -65.69 284.54 2.87 -62.82 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.01 Total: 6.23 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.76 Total: -33.84 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -3.92 Total: -83.84 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -65.69 2.87 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015547.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.050 kcal (2) G-P(sol) polarization free energy of solvation -65.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds