Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 C 1.53002 * 109.46983 * 240.00109 * 2 1 3 5 5 C 1.50700 * 109.46651 * 175.00368 * 4 2 1 6 6 H 1.07998 * 120.00183 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99869 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99641 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00041 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47123 * 89.99785 * 9 7 5 11 11 H 1.48500 * 109.46892 * 209.99936 * 9 7 5 12 12 H 1.48501 * 109.47323 * 329.99774 * 9 7 5 13 13 N 1.46894 * 109.46736 * 120.00064 * 2 1 3 14 14 C 1.48532 * 111.00655 * 49.14960 * 13 2 1 15 15 C 1.54931 * 103.23003 * 200.27889 * 14 13 2 16 16 C 1.54591 * 102.92171 * 37.41175 * 15 14 13 17 17 H 1.09002 * 110.30629 * 96.95939 * 16 15 14 18 18 C 1.53001 * 110.30841 * 219.12437 * 16 15 14 19 19 C 1.47898 * 111.00178 * 291.75076 * 13 2 1 20 20 H 1.08997 * 109.91777 * 26.29648 * 19 13 2 21 21 C 1.53007 * 109.91779 * 265.19959 * 19 13 2 22 22 H 1.09001 * 109.47054 * 292.46737 * 1 2 3 23 23 H 1.09005 * 109.47161 * 52.46449 * 1 2 3 24 24 H 1.08995 * 109.47148 * 172.46297 * 1 2 3 25 25 H 1.09000 * 109.46767 * 294.99923 * 4 2 1 26 26 H 1.08995 * 109.47293 * 55.00401 * 4 2 1 27 27 H 0.97003 * 120.00158 * 180.02562 * 8 7 5 28 28 H 1.09002 * 110.66225 * 318.71839 * 14 13 2 29 29 H 1.09000 * 110.66686 * 81.67124 * 14 13 2 30 30 H 1.09002 * 110.72178 * 155.77433 * 15 14 13 31 31 H 1.09004 * 110.72229 * 278.87557 * 15 14 13 32 32 H 1.08998 * 109.47380 * 175.71822 * 18 16 15 33 33 H 1.09006 * 109.47279 * 295.71992 * 18 16 15 34 34 H 1.08996 * 109.46826 * 55.71879 * 18 16 15 35 35 H 1.09000 * 109.47143 * 61.45518 * 21 19 13 36 36 H 1.09001 * 109.47122 * 181.44987 * 21 19 13 37 37 H 1.08998 * 109.47086 * 301.44971 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8368 -3.3000 9 14 6.0920 -1.0603 -2.4372 10 1 6.7008 -2.2129 -1.7258 11 1 6.5290 -1.0676 -3.8565 12 1 6.5261 0.2049 -1.7922 13 7 2.0196 -0.6925 1.1994 14 6 1.3419 -2.0030 1.3715 15 6 1.5603 -2.3207 2.8721 16 6 1.4283 -0.9337 3.5419 17 1 0.4191 -0.7955 3.9300 18 6 2.4555 -0.7871 4.6663 19 6 1.7138 0.0830 2.4211 20 1 0.8386 0.7106 2.2532 21 6 2.9139 0.9532 2.8001 22 1 -0.3633 0.3927 0.9497 23 1 -0.3634 0.6261 -0.8150 24 1 -0.3633 -1.0187 -0.1348 25 1 1.7516 -1.7715 -1.2056 26 1 1.6055 -0.2617 -2.1370 27 1 4.0607 -2.2436 -4.0355 28 1 0.2787 -1.9186 1.1468 29 1 1.8075 -2.7622 0.7431 30 1 0.7910 -3.0007 3.2382 31 1 2.5532 -2.7390 3.0373 32 1 2.4021 0.2206 5.0781 33 1 2.2409 -1.5123 5.4513 34 1 3.4553 -0.9654 4.2705 35 1 3.1201 1.6584 1.9950 36 1 2.6904 1.5017 3.7152 37 1 3.7861 0.3194 2.9603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = -7.529422 kcal Electronic energy + Delta-G solvation = -15020.318490 eV Core-core repulsion = 12797.104976 eV Total energy + Delta-G solvation = -2223.213515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34794 -34.91625 -32.40253 -31.06310 -29.72448 -27.28927 -26.06491 -24.46122 -23.08916 -21.48761 -18.96885 -18.34483 -16.19393 -15.88037 -14.73750 -14.32281 -14.08150 -13.96239 -13.48343 -12.97662 -12.29319 -12.14570 -11.81476 -11.70657 -11.48366 -11.40160 -11.16722 -10.90389 -10.69281 -10.53848 -10.40494 -10.33949 -10.17286 -9.99555 -9.81326 -9.10927 -8.94472 -8.21586 -7.45758 -5.84264 -3.81522 3.42292 3.47776 3.52162 4.59745 4.65080 4.92725 5.07513 5.16723 5.52769 5.59396 5.68869 5.72810 5.75664 5.86274 5.90817 5.96611 6.00310 6.06558 6.14344 6.17145 6.25219 6.36705 6.44848 6.52843 6.61998 6.65714 6.76589 6.79454 7.08066 7.57850 7.72103 7.90701 8.08932 8.17937 8.64096 9.24396 9.79709 11.27899 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.009493 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.311219 B = 2948.837790 C = 3267.138042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.067 0.933 4 C 0.033 3.967 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.482 5.482 14 C 0.033 3.967 15 C -0.119 4.119 16 C -0.098 4.098 17 H 0.064 0.936 18 C -0.140 4.140 19 C 0.058 3.942 20 H 0.045 0.955 21 C -0.133 4.133 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.256 0.744 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 2.036 12.758 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.004 4.004 5 C -0.525 4.525 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.206 5.206 14 C -0.094 4.094 15 C -0.157 4.157 16 C -0.117 4.117 17 H 0.082 0.918 18 C -0.197 4.197 19 C -0.051 4.051 20 H 0.063 0.937 21 C -0.190 4.190 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.383 1.898 12.516 13.396 hybrid contribution 0.078 0.122 -0.146 0.205 sum -4.305 2.019 12.370 13.253 Atomic orbital electron populations 1.22537 0.99927 1.01528 1.00339 1.22036 0.89981 0.98474 0.92601 0.91449 1.19123 0.96312 0.95262 0.89685 1.21178 0.91839 1.32746 1.06782 0.92184 1.25009 0.97967 0.95991 0.96026 1.69968 1.35131 1.37123 1.12405 0.86631 0.86522 0.78327 0.76688 1.20943 1.21667 1.20052 1.64908 1.53450 1.01795 1.00397 1.23229 0.97182 0.93668 0.95361 1.22569 1.01705 0.95850 0.95586 1.21977 0.98629 0.95616 0.95503 0.91751 1.21915 0.99660 1.00843 0.97329 1.22434 0.96775 0.94869 0.91040 0.93738 1.21816 0.98497 0.99037 0.99699 0.94033 0.92716 0.92574 0.96464 0.96536 0.93396 0.93884 0.89775 0.92139 0.90943 0.92761 0.93580 0.91791 0.92998 0.93379 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.18 37.16 0.30 -2.97 16 2 C 0.08 1.63 2.22 -67.71 -0.15 1.48 16 3 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 4 C 0.03 0.87 4.46 -27.88 -0.12 0.74 16 5 C -0.49 -13.92 8.84 -34.44 -0.30 -14.23 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.72 13.29 55.43 0.74 -26.99 16 9 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.48 -9.41 4.59 -214.68 -0.98 -10.39 16 14 C 0.03 0.60 5.57 -1.90 -0.01 0.59 16 15 C -0.12 -1.74 6.60 -24.88 -0.16 -1.91 16 16 C -0.10 -1.35 3.59 -89.27 -0.32 -1.67 16 17 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.14 -1.68 7.92 37.16 0.29 -1.38 16 19 C 0.06 0.93 2.82 -66.64 -0.19 0.74 16 20 H 0.04 0.71 6.01 -51.93 -0.31 0.40 16 21 C -0.13 -2.02 8.36 37.16 0.31 -1.71 16 22 H 0.04 0.66 6.28 -51.93 -0.33 0.33 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16 25 H 0.02 0.47 7.09 -51.93 -0.37 0.10 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.04 0.74 5.46 -51.93 -0.28 0.45 16 29 H 0.08 1.69 7.64 -51.93 -0.40 1.30 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 32 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.83 6.74 -51.93 -0.35 0.48 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.61 6.85 -51.93 -0.36 0.25 16 37 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 LS Contribution 279.47 15.07 4.21 4.21 Total: -1.00 -30.05 279.47 -7.83 -37.88 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.33 Total: -3.16 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.45 Total: -18.98 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.25 Total: -37.38 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.05 -7.83 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.352 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds