Wall clock time and date at job start Sun Mar 29 2020 21:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47152 * 2 1 4 4 C 1.53002 * 109.46983 * 240.00109 * 2 1 3 5 5 C 1.50700 * 109.46651 * 175.00368 * 4 2 1 6 6 H 1.07998 * 120.00183 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99869 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99641 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00041 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47123 * 89.99785 * 9 7 5 11 11 H 1.48500 * 109.46892 * 209.99936 * 9 7 5 12 12 H 1.48501 * 109.47323 * 329.99774 * 9 7 5 13 13 N 1.46894 * 109.46736 * 120.00064 * 2 1 3 14 14 C 1.48532 * 111.00655 * 49.14960 * 13 2 1 15 15 C 1.54931 * 103.23003 * 200.27889 * 14 13 2 16 16 C 1.54591 * 102.92171 * 37.41175 * 15 14 13 17 17 H 1.09002 * 110.30629 * 96.95939 * 16 15 14 18 18 C 1.53001 * 110.30841 * 219.12437 * 16 15 14 19 19 C 1.47898 * 111.00178 * 291.75076 * 13 2 1 20 20 H 1.08997 * 109.91777 * 26.29648 * 19 13 2 21 21 C 1.53007 * 109.91779 * 265.19959 * 19 13 2 22 22 H 1.09001 * 109.47054 * 292.46737 * 1 2 3 23 23 H 1.09005 * 109.47161 * 52.46449 * 1 2 3 24 24 H 1.08995 * 109.47148 * 172.46297 * 1 2 3 25 25 H 1.09000 * 109.46767 * 294.99923 * 4 2 1 26 26 H 1.08995 * 109.47293 * 55.00401 * 4 2 1 27 27 H 0.97003 * 120.00158 * 180.02562 * 8 7 5 28 28 H 1.09002 * 110.66225 * 318.71839 * 14 13 2 29 29 H 1.09000 * 110.66686 * 81.67124 * 14 13 2 30 30 H 1.09002 * 110.72178 * 155.77433 * 15 14 13 31 31 H 1.09004 * 110.72229 * 278.87557 * 15 14 13 32 32 H 1.08998 * 109.47380 * 175.71822 * 18 16 15 33 33 H 1.09006 * 109.47279 * 295.71992 * 18 16 15 34 34 H 1.08996 * 109.46826 * 55.71879 * 18 16 15 35 35 H 1.09000 * 109.47143 * 61.45518 * 21 19 13 36 36 H 1.09001 * 109.47122 * 181.44987 * 21 19 13 37 37 H 1.08998 * 109.47086 * 301.44971 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1926 -2.3583 8 7 3.5764 -1.8368 -3.3000 9 14 6.0920 -1.0603 -2.4372 10 1 6.7008 -2.2129 -1.7258 11 1 6.5290 -1.0676 -3.8565 12 1 6.5261 0.2049 -1.7922 13 7 2.0196 -0.6925 1.1994 14 6 1.3419 -2.0030 1.3715 15 6 1.5603 -2.3207 2.8721 16 6 1.4283 -0.9337 3.5419 17 1 0.4191 -0.7955 3.9300 18 6 2.4555 -0.7871 4.6663 19 6 1.7138 0.0830 2.4211 20 1 0.8386 0.7106 2.2532 21 6 2.9139 0.9532 2.8001 22 1 -0.3633 0.3927 0.9497 23 1 -0.3634 0.6261 -0.8150 24 1 -0.3633 -1.0187 -0.1348 25 1 1.7516 -1.7715 -1.2056 26 1 1.6055 -0.2617 -2.1370 27 1 4.0607 -2.2436 -4.0355 28 1 0.2787 -1.9186 1.1468 29 1 1.8075 -2.7622 0.7431 30 1 0.7910 -3.0007 3.2382 31 1 2.5532 -2.7390 3.0373 32 1 2.4021 0.2206 5.0781 33 1 2.2409 -1.5123 5.4513 34 1 3.4553 -0.9654 4.2705 35 1 3.1201 1.6584 1.9950 36 1 2.6904 1.5017 3.7152 37 1 3.7861 0.3194 2.9603 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015771.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:26 Heat of formation + Delta-G solvation = -26.009109 kcal Electronic energy + Delta-G solvation = -15021.119830 eV Core-core repulsion = 12797.104976 eV Total energy + Delta-G solvation = -2224.014854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71140 -36.48748 -34.47546 -32.35874 -31.19971 -29.19966 -27.32801 -25.71756 -25.02571 -23.01186 -20.42692 -19.66866 -18.36601 -17.35417 -16.46288 -16.06906 -15.44987 -15.20799 -14.67471 -14.60912 -14.01597 -13.68971 -13.48817 -13.13008 -13.03750 -12.77660 -12.68151 -12.48620 -12.33326 -12.20255 -11.98254 -11.75333 -11.47031 -11.33505 -11.18984 -11.11374 -10.98150 -10.49040 -8.93379 -8.10770 -6.15586 1.39994 1.41501 1.52281 2.46491 3.17939 3.30494 3.74554 3.87163 4.04980 4.20657 4.36911 4.46004 4.53599 4.54857 4.58074 4.69649 4.82177 4.88859 4.93332 4.99867 5.02520 5.09476 5.19197 5.22628 5.25653 5.32633 5.38616 5.47055 5.49101 5.65795 5.71339 5.88672 6.32463 6.39414 6.57341 6.97956 7.49969 9.01455 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.009493 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.311219 B = 2948.837790 C = 3267.138042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.058 0.942 4 C 0.041 3.959 5 C -0.498 4.498 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.958 3.042 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.509 5.509 14 C 0.031 3.969 15 C -0.112 4.112 16 C -0.092 4.092 17 H 0.086 0.914 18 C -0.136 4.136 19 C 0.054 3.946 20 H 0.051 0.949 21 C -0.129 4.129 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.053 0.947 25 H -0.008 1.008 26 H -0.011 1.011 27 H 0.259 0.741 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 2.614 15.014 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 H 0.076 0.924 4 C 0.003 3.997 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.233 5.233 14 C -0.097 4.097 15 C -0.150 4.150 16 C -0.110 4.110 17 H 0.104 0.896 18 C -0.194 4.194 19 C -0.054 4.054 20 H 0.069 0.931 21 C -0.187 4.187 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.478 2.483 14.788 15.650 hybrid contribution 0.090 -0.066 -0.860 0.867 sum -4.388 2.417 13.929 14.802 Atomic orbital electron populations 1.22393 0.97231 1.01676 1.01936 1.21698 0.92102 0.97091 0.91383 0.92369 1.18964 0.95242 0.94051 0.91409 1.21473 0.93271 1.32358 1.06546 0.92628 1.25877 1.03012 0.95672 0.95704 1.70098 1.37087 1.38060 1.13071 0.85555 0.80513 0.78660 0.76933 1.20347 1.21036 1.19074 1.64772 1.54498 1.02822 1.01181 1.23198 0.97041 0.92193 0.97287 1.22541 1.02146 0.97219 0.93048 1.21989 1.00419 0.93649 0.94993 0.89551 1.21875 0.98154 1.02316 0.97013 1.22564 0.97258 0.95347 0.90251 0.93118 1.21813 0.97892 0.98550 1.00427 0.91369 0.92403 0.92842 0.99002 0.99250 0.93270 0.93023 0.93424 0.89571 0.91792 0.91319 0.91825 0.93302 0.94951 0.90207 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.02 8.18 71.98 0.59 -5.43 16 2 C 0.09 3.66 2.22 44.92 0.10 3.76 16 3 H 0.06 2.55 8.10 -2.39 -0.02 2.53 16 4 C 0.04 2.20 4.46 29.85 0.13 2.33 16 5 C -0.50 -29.26 8.84 25.60 0.23 -29.04 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 9 Si 0.96 46.64 29.54 68.60 2.03 48.66 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.51 -19.77 4.59 -833.12 -3.82 -23.59 16 14 C 0.03 1.09 5.57 86.65 0.48 1.57 16 15 C -0.11 -3.04 6.60 31.80 0.21 -2.83 16 16 C -0.09 -2.21 3.59 -9.92 -0.04 -2.24 16 17 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.14 -2.78 7.92 71.98 0.57 -2.21 16 19 C 0.05 1.62 2.82 45.06 0.13 1.75 16 20 H 0.05 1.47 6.01 -2.39 -0.01 1.45 16 21 C -0.13 -3.70 8.36 71.98 0.60 -3.10 16 22 H 0.07 2.00 6.28 -2.39 -0.01 1.98 16 23 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 24 H 0.05 1.87 6.40 -2.39 -0.02 1.85 16 25 H -0.01 -0.49 7.09 -2.39 -0.02 -0.51 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.05 1.73 5.46 -2.39 -0.01 1.72 16 29 H 0.05 2.00 7.64 -2.39 -0.02 1.99 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.84 7.85 -2.39 -0.02 1.82 16 32 H 0.07 1.21 6.75 -2.39 -0.02 1.19 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 1.15 6.74 -2.39 -0.02 1.13 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.75 6.85 -2.39 -0.02 1.74 16 37 H 0.05 1.64 6.66 -2.39 -0.02 1.62 16 Total: -1.00 -65.88 279.47 2.97 -62.91 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.02 Total: 6.25 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.47 Total: -35.39 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.54 Total: -82.43 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -65.88 2.97 -62.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015771.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.900 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds