Wall clock time and date at job start Sun Mar 29 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47378 * 2 1 4 4 C 1.53001 * 109.47500 * 120.00305 * 2 1 3 5 5 C 1.50693 * 109.47478 * 180.90309 * 4 2 1 6 6 H 1.08005 * 119.99914 * 355.15704 * 5 4 2 7 7 C 1.37874 * 120.00457 * 175.16153 * 5 4 2 8 8 N 1.31513 * 120.00582 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99465 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46881 * 90.00356 * 9 7 5 11 11 H 1.48501 * 109.46954 * 209.99663 * 9 7 5 12 12 H 1.48497 * 109.47524 * 330.00052 * 9 7 5 13 13 N 1.46901 * 109.46930 * 240.00353 * 2 1 3 14 14 C 1.48534 * 111.00151 * 63.87026 * 13 2 1 15 15 C 1.54942 * 103.22460 * 200.27707 * 14 13 2 16 16 C 1.54597 * 103.08268 * 37.32992 * 15 14 13 17 17 H 1.08994 * 110.30931 * 97.04266 * 16 15 14 18 18 C 1.53005 * 110.30437 * 219.21555 * 16 15 14 19 19 C 1.47906 * 111.00199 * 306.47295 * 13 2 1 20 20 H 1.09001 * 109.91040 * 26.29133 * 19 13 2 21 21 C 1.52998 * 109.91535 * 265.20175 * 19 13 2 22 22 H 1.08996 * 109.46643 * 187.54107 * 1 2 3 23 23 H 1.08997 * 109.46757 * 307.53871 * 1 2 3 24 24 H 1.08999 * 109.47173 * 67.54032 * 1 2 3 25 25 H 1.09005 * 109.46627 * 300.90430 * 4 2 1 26 26 H 1.08997 * 109.46902 * 60.90034 * 4 2 1 27 27 H 0.96994 * 120.00385 * 180.02562 * 8 7 5 28 28 H 1.09005 * 110.66394 * 81.84885 * 14 13 2 29 29 H 1.08992 * 110.80841 * 318.78086 * 14 13 2 30 30 H 1.09001 * 110.72282 * 155.77275 * 15 14 13 31 31 H 1.09000 * 110.72690 * 278.87823 * 15 14 13 32 32 H 1.08999 * 109.47368 * 58.54421 * 18 16 15 33 33 H 1.09003 * 109.46605 * 178.54249 * 18 16 15 34 34 H 1.08997 * 109.46685 * 298.53775 * 18 16 15 35 35 H 1.09002 * 109.47680 * 66.17365 * 21 19 13 36 36 H 1.09005 * 109.47211 * 186.17100 * 21 19 13 37 37 H 1.09005 * 109.46972 * 306.16466 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5469 -0.7019 1.2604 6 1 4.0880 -0.2929 0.4199 7 6 4.2348 -1.2065 2.3435 8 7 5.5498 -1.1900 2.3531 9 14 3.2989 -1.9134 3.7974 10 1 3.0712 -3.3648 3.5811 11 1 4.0901 -1.7162 5.0386 12 1 1.9916 -1.2214 3.9285 13 7 2.0197 -0.6924 -1.1995 14 6 1.6213 0.0331 -2.4329 15 6 1.7346 -1.0510 -3.5340 16 6 1.2400 -2.3293 -2.8188 17 1 0.1885 -2.5064 -3.0448 18 6 2.0850 -3.5336 -3.2392 19 6 1.4225 -2.0407 -1.3142 20 1 0.4579 -2.0638 -0.8069 21 6 2.3604 -3.0803 -0.6975 22 1 -0.3632 -1.0188 0.1349 23 1 -0.3633 0.6262 0.8149 24 1 -0.3633 0.3926 -0.9497 25 1 1.6636 -0.2169 2.1391 26 1 1.6901 -1.7535 1.2411 27 1 6.0338 -1.5453 3.1150 28 1 2.3062 0.8572 -2.6325 29 1 0.5967 0.3963 -2.3545 30 1 1.0918 -0.8095 -4.3806 31 1 2.7691 -1.1657 -3.8575 32 1 3.1309 -3.3463 -2.9958 33 1 1.7417 -4.4213 -2.7080 34 1 1.9843 -3.6910 -4.3130 35 1 2.4337 -2.9118 0.3769 36 1 1.9668 -4.0799 -0.8824 37 1 3.3490 -2.9902 -1.1477 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:29 Heat of formation + Delta-G solvation = 3.379466 kcal Electronic energy + Delta-G solvation = -15267.626590 eV Core-core repulsion = 13044.886120 eV Total energy + Delta-G solvation = -2222.740470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.42802 -34.84139 -32.48381 -31.27270 -29.44702 -27.88838 -26.13169 -24.36248 -22.93781 -20.75932 -19.78344 -17.86640 -16.52305 -16.40517 -14.54847 -14.28651 -13.92986 -13.64759 -13.36261 -13.20673 -12.49598 -12.21266 -12.13155 -11.76163 -11.73316 -11.18820 -11.08526 -10.87837 -10.74850 -10.62068 -10.44180 -10.14687 -9.89538 -9.69306 -9.54606 -9.38557 -8.98440 -8.38225 -7.49746 -5.86613 -3.79915 3.36818 3.44998 3.47168 4.56729 4.62384 4.98340 5.06924 5.20599 5.46159 5.51219 5.72323 5.76840 5.78134 5.82268 5.89305 5.93360 5.99415 6.09979 6.26253 6.31502 6.36181 6.38605 6.43293 6.51516 6.63400 6.63964 6.79466 6.97223 7.06230 7.29535 7.57233 7.76361 7.88729 8.03361 8.78478 9.29318 9.76724 11.27422 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.010615 C = 0.009713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.552387 B = 2637.050473 C = 2881.966859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 H 0.074 0.926 4 C -0.012 4.012 5 C -0.483 4.483 6 H 0.082 0.918 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.866 3.134 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.480 5.480 14 C 0.026 3.974 15 C -0.117 4.117 16 C -0.100 4.100 17 H 0.062 0.938 18 C -0.140 4.140 19 C 0.066 3.934 20 H 0.050 0.950 21 C -0.139 4.139 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.258 0.742 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -1.551 -9.230 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.023 4.023 3 H 0.092 0.908 4 C -0.049 4.049 5 C -0.521 4.521 6 H 0.100 0.900 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.694 3.306 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.203 5.203 14 C -0.102 4.102 15 C -0.155 4.155 16 C -0.119 4.119 17 H 0.081 0.919 18 C -0.197 4.197 19 C -0.042 4.042 20 H 0.068 0.932 21 C -0.196 4.196 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.391 -1.625 -9.052 13.144 hybrid contribution -1.345 -0.327 0.866 1.632 sum -10.736 -1.952 -8.186 13.641 Atomic orbital electron populations 1.22594 0.99974 1.01440 1.00872 1.21783 0.89787 0.98673 0.92040 0.90786 1.19835 0.98189 0.95244 0.91678 1.21043 0.88875 1.38374 1.03856 0.90035 1.24995 0.94602 0.96200 0.97932 1.69906 1.06127 1.47936 1.30922 0.87001 0.80470 0.79837 0.83257 1.20561 1.21687 1.19309 1.64942 1.54103 1.00806 1.00469 1.23265 0.98637 0.97085 0.91211 1.22528 1.01471 0.94599 0.96901 1.22067 0.98748 0.95479 0.95610 0.91910 1.21902 1.01005 0.97298 0.99521 1.22458 0.96794 0.91223 0.93719 0.93206 1.22033 0.99483 0.94959 1.03162 0.92687 0.92657 0.93378 0.96570 0.96432 0.93162 0.90749 0.94298 0.92216 0.90878 0.91516 0.92680 0.93790 0.90437 0.94365 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 8.47 37.16 0.31 -2.83 16 2 C 0.09 1.72 2.37 -67.71 -0.16 1.56 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 4 C -0.01 -0.29 3.02 -27.89 -0.08 -0.37 16 5 C -0.48 -13.56 8.54 -34.44 -0.29 -13.86 16 6 H 0.08 2.54 7.87 -52.48 -0.41 2.12 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.30 13.96 55.43 0.77 -27.53 16 9 Si 0.87 21.89 27.57 -169.99 -4.69 17.20 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.52 6.40 56.52 0.36 -6.16 16 13 N -0.48 -9.22 4.45 -214.48 -0.95 -10.18 16 14 C 0.03 0.41 6.41 -1.89 -0.01 0.40 16 15 C -0.12 -1.63 6.60 -24.87 -0.16 -1.79 16 16 C -0.10 -1.44 3.60 -89.10 -0.32 -1.76 16 17 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.14 -1.87 7.91 37.16 0.29 -1.58 16 19 C 0.07 1.16 2.38 -66.48 -0.16 1.00 16 20 H 0.05 0.87 5.24 -51.93 -0.27 0.60 16 21 C -0.14 -2.67 7.78 37.16 0.29 -2.38 16 22 H 0.05 0.90 6.14 -51.93 -0.32 0.58 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.71 5.94 -51.93 -0.31 0.41 16 25 H 0.02 0.39 6.86 -51.93 -0.36 0.03 16 26 H 0.02 0.42 4.98 -51.93 -0.26 0.16 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.04 0.57 5.82 -51.93 -0.30 0.27 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 32 H 0.07 0.99 6.73 -51.93 -0.35 0.64 16 33 H 0.05 0.70 6.81 -51.93 -0.35 0.35 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.73 4.83 -51.93 -0.25 1.48 16 36 H 0.04 0.62 6.65 -51.93 -0.35 0.28 16 37 H 0.06 1.31 6.88 -51.93 -0.36 0.96 16 LS Contribution 268.91 15.07 4.05 4.05 Total: -1.00 -29.94 268.91 -7.21 -37.15 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.00 Total: -0.80 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.39 Total: -19.89 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.18 Total: -37.71 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.69 Total: 17.20 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.94 -7.21 -37.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.528 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds