Wall clock time and date at job start Sun Mar 29 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47378 * 2 1 4 4 C 1.53001 * 109.47500 * 120.00305 * 2 1 3 5 5 C 1.50693 * 109.47478 * 180.90309 * 4 2 1 6 6 H 1.08005 * 119.99914 * 355.15704 * 5 4 2 7 7 C 1.37874 * 120.00457 * 175.16153 * 5 4 2 8 8 N 1.31513 * 120.00582 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99465 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46881 * 90.00356 * 9 7 5 11 11 H 1.48501 * 109.46954 * 209.99663 * 9 7 5 12 12 H 1.48497 * 109.47524 * 330.00052 * 9 7 5 13 13 N 1.46901 * 109.46930 * 240.00353 * 2 1 3 14 14 C 1.48534 * 111.00151 * 63.87026 * 13 2 1 15 15 C 1.54942 * 103.22460 * 200.27707 * 14 13 2 16 16 C 1.54597 * 103.08268 * 37.32992 * 15 14 13 17 17 H 1.08994 * 110.30931 * 97.04266 * 16 15 14 18 18 C 1.53005 * 110.30437 * 219.21555 * 16 15 14 19 19 C 1.47906 * 111.00199 * 306.47295 * 13 2 1 20 20 H 1.09001 * 109.91040 * 26.29133 * 19 13 2 21 21 C 1.52998 * 109.91535 * 265.20175 * 19 13 2 22 22 H 1.08996 * 109.46643 * 187.54107 * 1 2 3 23 23 H 1.08997 * 109.46757 * 307.53871 * 1 2 3 24 24 H 1.08999 * 109.47173 * 67.54032 * 1 2 3 25 25 H 1.09005 * 109.46627 * 300.90430 * 4 2 1 26 26 H 1.08997 * 109.46902 * 60.90034 * 4 2 1 27 27 H 0.96994 * 120.00385 * 180.02562 * 8 7 5 28 28 H 1.09005 * 110.66394 * 81.84885 * 14 13 2 29 29 H 1.08992 * 110.80841 * 318.78086 * 14 13 2 30 30 H 1.09001 * 110.72282 * 155.77275 * 15 14 13 31 31 H 1.09000 * 110.72690 * 278.87823 * 15 14 13 32 32 H 1.08999 * 109.47368 * 58.54421 * 18 16 15 33 33 H 1.09003 * 109.46605 * 178.54249 * 18 16 15 34 34 H 1.08997 * 109.46685 * 298.53775 * 18 16 15 35 35 H 1.09002 * 109.47680 * 66.17365 * 21 19 13 36 36 H 1.09005 * 109.47211 * 186.17100 * 21 19 13 37 37 H 1.09005 * 109.46972 * 306.16466 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5469 -0.7019 1.2604 6 1 4.0880 -0.2929 0.4199 7 6 4.2348 -1.2065 2.3435 8 7 5.5498 -1.1900 2.3531 9 14 3.2989 -1.9134 3.7974 10 1 3.0712 -3.3648 3.5811 11 1 4.0901 -1.7162 5.0386 12 1 1.9916 -1.2214 3.9285 13 7 2.0197 -0.6924 -1.1995 14 6 1.6213 0.0331 -2.4329 15 6 1.7346 -1.0510 -3.5340 16 6 1.2400 -2.3293 -2.8188 17 1 0.1885 -2.5064 -3.0448 18 6 2.0850 -3.5336 -3.2392 19 6 1.4225 -2.0407 -1.3142 20 1 0.4579 -2.0638 -0.8069 21 6 2.3604 -3.0803 -0.6975 22 1 -0.3632 -1.0188 0.1349 23 1 -0.3633 0.6262 0.8149 24 1 -0.3633 0.3926 -0.9497 25 1 1.6636 -0.2169 2.1391 26 1 1.6901 -1.7535 1.2411 27 1 6.0338 -1.5453 3.1150 28 1 2.3062 0.8572 -2.6325 29 1 0.5967 0.3963 -2.3545 30 1 1.0918 -0.8095 -4.3806 31 1 2.7691 -1.1657 -3.8575 32 1 3.1309 -3.3463 -2.9958 33 1 1.7417 -4.4213 -2.7080 34 1 1.9843 -3.6910 -4.3130 35 1 2.4337 -2.9118 0.3769 36 1 1.9668 -4.0799 -0.8824 37 1 3.3490 -2.9902 -1.1477 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:29 Heat of formation + Delta-G solvation = -15.933168 kcal Electronic energy + Delta-G solvation = -15268.464048 eV Core-core repulsion = 13044.886120 eV Total energy + Delta-G solvation = -2223.577929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78589 -36.34716 -34.48463 -32.78393 -30.89789 -29.64498 -27.41412 -25.66385 -24.80939 -22.24690 -21.18326 -19.27000 -18.72810 -17.77357 -16.34169 -15.79459 -15.31069 -15.02035 -14.75335 -14.67244 -14.36690 -13.87527 -13.70923 -13.21495 -13.06741 -12.66771 -12.62395 -12.46924 -12.25559 -11.98064 -11.70570 -11.61630 -11.43943 -11.40642 -11.20348 -11.06549 -10.93820 -10.62326 -8.89495 -8.13781 -6.11166 1.35777 1.37445 1.47574 2.42916 3.16679 3.31731 3.77496 3.86664 4.05461 4.17040 4.39856 4.45819 4.51678 4.58627 4.63097 4.69961 4.83999 4.86447 4.94616 5.00564 5.05835 5.08614 5.11788 5.16780 5.23873 5.28591 5.39161 5.42067 5.54374 5.59179 5.78992 5.85372 6.38552 6.44714 6.61918 6.97785 7.48666 9.03820 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034579 B = 0.010615 C = 0.009713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.552387 B = 2637.050473 C = 2881.966859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.056 0.944 4 C -0.008 4.008 5 C -0.474 4.474 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.959 5.959 9 Si 0.934 3.066 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.248 1.248 13 N -0.515 5.515 14 C 0.025 3.975 15 C -0.111 4.111 16 C -0.094 4.094 17 H 0.088 0.912 18 C -0.138 4.138 19 C 0.064 3.936 20 H 0.057 0.943 21 C -0.133 4.133 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.259 0.741 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.115 -2.168 -10.026 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.022 4.022 3 H 0.075 0.925 4 C -0.046 4.046 5 C -0.512 4.512 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.602 5.602 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.172 1.172 13 N -0.239 5.239 14 C -0.102 4.102 15 C -0.149 4.149 16 C -0.113 4.113 17 H 0.107 0.893 18 C -0.195 4.195 19 C -0.044 4.044 20 H 0.075 0.925 21 C -0.190 4.190 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.408 -2.233 -9.863 16.007 hybrid contribution -0.333 -0.101 1.032 1.089 sum -12.741 -2.334 -8.831 15.677 Atomic orbital electron populations 1.22440 0.96586 1.02122 1.02492 1.21586 0.92422 0.97152 0.91065 0.92522 1.19767 0.94916 0.96096 0.93791 1.21185 0.91309 1.36737 1.02012 0.94623 1.25861 0.95383 0.96998 1.01316 1.70078 1.08145 1.49923 1.32101 0.85905 0.79693 0.79430 0.79079 1.19660 1.21688 1.17200 1.64811 1.55652 1.02103 1.01365 1.23317 0.99313 0.97277 0.90287 1.22521 1.01595 0.93613 0.97144 1.22075 1.00384 0.95858 0.93013 0.89323 1.21860 0.99338 0.97154 1.01135 1.22508 0.96064 0.89706 0.96152 0.92518 1.21959 0.99055 0.97448 1.00548 0.92210 0.91796 0.91207 0.96660 0.95788 0.93239 0.91633 0.92433 0.89000 0.92073 0.93944 0.92117 0.91473 0.94041 0.91653 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.36 8.47 71.98 0.61 -4.75 16 2 C 0.09 3.42 2.37 44.92 0.11 3.52 16 3 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.01 -0.40 3.02 29.85 0.09 -0.31 16 5 C -0.47 -27.52 8.54 25.60 0.22 -27.30 16 6 H 0.04 2.34 7.87 -2.91 -0.02 2.32 16 7 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 8 N -0.96 -62.09 13.96 21.45 0.30 -61.79 16 9 Si 0.93 45.55 27.57 68.60 1.89 47.44 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 12 H -0.25 -11.21 6.40 99.48 0.64 -10.58 16 13 N -0.52 -19.56 4.45 -832.47 -3.70 -23.26 16 14 C 0.03 0.76 6.41 86.65 0.56 1.31 16 15 C -0.11 -2.78 6.60 31.80 0.21 -2.57 16 16 C -0.09 -2.42 3.60 -9.81 -0.04 -2.45 16 17 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 18 C -0.14 -3.36 7.91 71.98 0.57 -2.79 16 19 C 0.06 2.12 2.38 45.16 0.11 2.23 16 20 H 0.06 1.82 5.24 -2.39 -0.01 1.80 16 21 C -0.13 -5.07 7.78 71.98 0.56 -4.51 16 22 H 0.06 1.75 6.14 -2.39 -0.01 1.74 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 1.80 5.94 -2.39 -0.01 1.79 16 25 H 0.02 0.72 6.86 -2.38 -0.02 0.70 16 26 H 0.02 1.12 4.98 -2.39 -0.01 1.11 16 27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.06 1.50 5.82 -2.39 -0.01 1.49 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.67 7.86 -2.39 -0.02 1.65 16 32 H 0.04 1.23 6.73 -2.39 -0.02 1.21 16 33 H 0.06 1.39 6.81 -2.39 -0.02 1.38 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.86 4.83 -2.39 -0.01 1.84 16 36 H 0.06 2.06 6.65 -2.38 -0.02 2.05 16 37 H 0.04 1.61 6.88 -2.38 -0.02 1.60 16 Total: -1.00 -67.00 268.91 2.90 -64.09 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.96 Total: 10.72 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.45 Total: -37.20 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -3.40 Total: -85.05 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.89 Total: 47.44 kcal Total: -67.00 2.90 -64.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.161 kcal (2) G-P(sol) polarization free energy of solvation -66.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds