Wall clock time and date at job start Sun Mar 29 2020 21:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47170 * 119.99815 * 2 1 3 5 5 C 1.50694 * 109.47490 * 182.87389 * 4 2 1 6 6 H 1.08000 * 120.00262 * 359.79651 * 5 4 2 7 7 C 1.37876 * 120.00026 * 179.79351 * 5 4 2 8 8 N 1.31515 * 120.00322 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99977 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47236 * 90.00123 * 9 7 5 11 11 H 1.48500 * 109.47026 * 210.00522 * 9 7 5 12 12 H 1.48501 * 109.46698 * 330.00143 * 9 7 5 13 13 N 1.46901 * 109.47153 * 239.99856 * 2 1 3 14 14 C 1.47900 * 110.99895 * 296.74589 * 13 2 1 15 15 C 1.53994 * 107.05806 * 145.84510 * 14 13 2 16 16 C 1.54593 * 105.22628 * 358.72453 * 15 14 13 17 17 H 1.09003 * 110.72456 * 96.44728 * 16 15 14 18 18 C 1.52997 * 110.72669 * 219.73300 * 16 15 14 19 19 C 1.48532 * 111.00117 * 54.14467 * 13 2 1 20 20 H 1.09002 * 110.66387 * 318.71314 * 19 13 2 21 21 C 1.53000 * 110.66887 * 81.67584 * 19 13 2 22 22 H 1.09000 * 109.46809 * 292.78774 * 1 2 3 23 23 H 1.09008 * 109.46821 * 52.78591 * 1 2 3 24 24 H 1.08994 * 109.47078 * 172.78392 * 1 2 3 25 25 H 1.09004 * 109.47065 * 302.87400 * 4 2 1 26 26 H 1.09004 * 109.47293 * 62.86999 * 4 2 1 27 27 H 0.96995 * 119.99897 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.91653 * 26.49067 * 14 13 2 29 29 H 1.09004 * 110.08095 * 265.29234 * 14 13 2 30 30 H 1.09000 * 110.30757 * 117.69183 * 15 14 13 31 31 H 1.08994 * 110.30840 * 239.76119 * 15 14 13 32 32 H 1.09004 * 109.46722 * 58.54747 * 18 16 15 33 33 H 1.08995 * 109.47249 * 178.54596 * 18 16 15 34 34 H 1.08994 * 109.47233 * 298.54937 * 18 16 15 35 35 H 1.08997 * 109.47064 * 54.56368 * 21 19 13 36 36 H 1.08997 * 109.46758 * 174.56537 * 21 19 13 37 37 H 1.09001 * 109.46931 * 294.56673 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5453 -0.6598 1.2854 6 1 4.0845 -0.1596 0.4947 7 6 4.2341 -1.2423 2.3282 8 7 3.5775 -1.8518 3.2910 9 14 6.1000 -1.1656 2.3734 10 1 6.5277 0.0564 3.1007 11 1 6.6280 -2.3664 3.0695 12 1 6.6275 -1.1259 0.9858 13 7 2.0197 -0.6925 -1.1994 14 6 1.6105 -2.1138 -1.1950 15 6 1.3540 -2.5146 -2.6596 16 6 1.6099 -1.2312 -3.4825 17 1 2.6233 -1.2261 -3.8840 18 6 0.5802 -1.0938 -4.6057 19 6 1.4313 -0.1056 -2.4305 20 1 0.3746 0.1174 -2.2832 21 6 2.1943 1.1538 -2.8462 22 1 -0.3633 0.3980 0.9475 23 1 -0.3633 0.6216 -0.8185 24 1 -0.3633 -1.0195 -0.1291 25 1 1.6352 -0.2379 2.1385 26 1 1.7193 -1.7627 1.2240 27 1 4.0622 -2.2619 4.0243 28 1 0.6980 -2.2357 -0.6114 29 1 2.4049 -2.7307 -0.7748 30 1 2.0438 -3.3022 -2.9626 31 1 0.3233 -2.8459 -2.7862 32 1 -0.4223 -1.0692 -4.1785 33 1 0.7635 -0.1709 -5.1558 34 1 0.6658 -1.9435 -5.2830 35 1 3.2542 0.9200 -2.9463 36 1 1.8097 1.5130 -3.8007 37 1 2.0625 1.9254 -2.0877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:31 Heat of formation + Delta-G solvation = -12.342839 kcal Electronic energy + Delta-G solvation = -14992.859268 eV Core-core repulsion = 12769.437027 eV Total energy + Delta-G solvation = -2223.422240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25922 -34.75703 -32.36143 -31.00221 -29.95674 -27.32040 -26.53532 -23.84398 -23.05747 -21.41626 -19.47015 -18.17399 -16.12580 -15.77211 -14.91806 -14.38041 -13.96912 -13.72551 -13.22444 -12.93967 -12.54789 -12.22618 -12.07495 -11.70606 -11.51990 -11.32986 -11.19304 -10.96409 -10.80009 -10.56500 -10.52894 -10.36351 -10.16811 -10.00961 -9.71525 -9.05450 -8.97842 -8.22996 -7.43415 -5.85985 -3.83784 3.40977 3.46924 3.52692 4.58469 4.65465 4.90133 5.05319 5.28525 5.50985 5.57059 5.62991 5.71442 5.74703 5.87282 5.90442 5.95017 5.96873 6.03411 6.10864 6.15570 6.21935 6.37778 6.42817 6.53666 6.58213 6.72307 6.76926 6.86915 7.04109 7.58327 7.76009 7.88605 8.07137 8.17212 8.62100 9.23344 9.78120 11.26053 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.008829 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.501814 B = 3170.532985 C = 3309.231780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 H 0.070 0.930 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.484 5.484 14 C 0.041 3.959 15 C -0.128 4.128 16 C -0.092 4.092 17 H 0.078 0.922 18 C -0.140 4.140 19 C 0.053 3.947 20 H 0.051 0.949 21 C -0.132 4.132 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.257 0.743 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 1.739 -12.539 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.031 4.031 3 H 0.088 0.912 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.208 5.208 14 C -0.086 4.086 15 C -0.166 4.166 16 C -0.111 4.111 17 H 0.097 0.903 18 C -0.197 4.197 19 C -0.056 4.056 20 H 0.069 0.931 21 C -0.189 4.189 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.374 1.697 -12.357 13.582 hybrid contribution 0.111 -0.123 0.273 0.319 sum -5.264 1.574 -12.085 13.275 Atomic orbital electron populations 1.22549 1.00044 1.00988 1.00932 1.22005 0.89925 0.98799 0.92395 0.91196 1.19220 0.96444 0.95313 0.89944 1.21204 0.91540 1.33782 1.06336 0.91972 1.25015 0.98016 0.95955 0.95946 1.69968 1.35121 1.37878 1.11610 0.86638 0.86477 0.77152 0.77995 1.21012 1.21601 1.19868 1.64919 1.53971 1.01199 1.00661 1.22755 1.00074 0.91314 0.94506 1.22511 1.00649 0.97484 0.95968 1.22105 0.99451 0.94861 0.94730 0.90310 1.21766 0.98690 1.01180 0.98090 1.22933 0.96918 0.94450 0.91271 0.93096 1.21623 1.00997 0.96665 0.99664 0.92525 0.93821 0.92923 0.96479 0.96359 0.93367 0.93823 0.89984 0.91705 0.92348 0.93027 0.92843 0.92913 0.91957 0.93341 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 8.36 37.16 0.31 -3.01 16 2 C 0.08 1.62 2.37 -67.71 -0.16 1.46 16 3 H 0.07 1.51 7.67 -51.93 -0.40 1.11 16 4 C 0.03 0.72 4.23 -27.89 -0.12 0.60 16 5 C -0.49 -13.97 8.79 -34.44 -0.30 -14.27 16 6 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.48 -9.50 4.70 -214.62 -1.01 -10.51 16 14 C 0.04 0.78 5.07 -2.75 -0.01 0.76 16 15 C -0.13 -1.90 6.50 -25.38 -0.17 -2.06 16 16 C -0.09 -1.29 3.11 -88.67 -0.28 -1.57 16 17 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 18 C -0.14 -1.56 9.15 37.16 0.34 -1.22 16 19 C 0.05 0.84 2.15 -65.70 -0.14 0.69 16 20 H 0.05 0.80 5.49 -51.93 -0.29 0.52 16 21 C -0.13 -1.94 9.47 37.16 0.35 -1.59 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.04 0.69 6.38 -51.92 -0.33 0.36 16 24 H 0.05 0.93 5.96 -51.93 -0.31 0.62 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.50 6.76 -51.93 -0.35 0.15 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.04 0.83 5.28 -51.93 -0.27 0.55 16 29 H 0.08 1.74 8.13 -51.93 -0.42 1.32 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 32 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.79 7.70 -51.93 -0.40 0.39 16 LS Contribution 283.93 15.07 4.28 4.28 Total: -1.00 -29.91 283.93 -7.80 -37.71 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.52 Total: -3.10 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.27 Total: -18.84 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.27 Total: -37.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.91 -7.80 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.368 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds