Wall clock time and date at job start Sun Mar 29 2020 21:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47170 * 119.99815 * 2 1 3 5 5 C 1.50694 * 109.47490 * 182.87389 * 4 2 1 6 6 H 1.08000 * 120.00262 * 359.79651 * 5 4 2 7 7 C 1.37876 * 120.00026 * 179.79351 * 5 4 2 8 8 N 1.31515 * 120.00322 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99977 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47236 * 90.00123 * 9 7 5 11 11 H 1.48500 * 109.47026 * 210.00522 * 9 7 5 12 12 H 1.48501 * 109.46698 * 330.00143 * 9 7 5 13 13 N 1.46901 * 109.47153 * 239.99856 * 2 1 3 14 14 C 1.47900 * 110.99895 * 296.74589 * 13 2 1 15 15 C 1.53994 * 107.05806 * 145.84510 * 14 13 2 16 16 C 1.54593 * 105.22628 * 358.72453 * 15 14 13 17 17 H 1.09003 * 110.72456 * 96.44728 * 16 15 14 18 18 C 1.52997 * 110.72669 * 219.73300 * 16 15 14 19 19 C 1.48532 * 111.00117 * 54.14467 * 13 2 1 20 20 H 1.09002 * 110.66387 * 318.71314 * 19 13 2 21 21 C 1.53000 * 110.66887 * 81.67584 * 19 13 2 22 22 H 1.09000 * 109.46809 * 292.78774 * 1 2 3 23 23 H 1.09008 * 109.46821 * 52.78591 * 1 2 3 24 24 H 1.08994 * 109.47078 * 172.78392 * 1 2 3 25 25 H 1.09004 * 109.47065 * 302.87400 * 4 2 1 26 26 H 1.09004 * 109.47293 * 62.86999 * 4 2 1 27 27 H 0.96995 * 119.99897 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.91653 * 26.49067 * 14 13 2 29 29 H 1.09004 * 110.08095 * 265.29234 * 14 13 2 30 30 H 1.09000 * 110.30757 * 117.69183 * 15 14 13 31 31 H 1.08994 * 110.30840 * 239.76119 * 15 14 13 32 32 H 1.09004 * 109.46722 * 58.54747 * 18 16 15 33 33 H 1.08995 * 109.47249 * 178.54596 * 18 16 15 34 34 H 1.08994 * 109.47233 * 298.54937 * 18 16 15 35 35 H 1.08997 * 109.47064 * 54.56368 * 21 19 13 36 36 H 1.08997 * 109.46758 * 174.56537 * 21 19 13 37 37 H 1.09001 * 109.46931 * 294.56673 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5453 -0.6598 1.2854 6 1 4.0845 -0.1596 0.4947 7 6 4.2341 -1.2423 2.3282 8 7 3.5775 -1.8518 3.2910 9 14 6.1000 -1.1656 2.3734 10 1 6.5277 0.0564 3.1007 11 1 6.6280 -2.3664 3.0695 12 1 6.6275 -1.1259 0.9858 13 7 2.0197 -0.6925 -1.1994 14 6 1.6105 -2.1138 -1.1950 15 6 1.3540 -2.5146 -2.6596 16 6 1.6099 -1.2312 -3.4825 17 1 2.6233 -1.2261 -3.8840 18 6 0.5802 -1.0938 -4.6057 19 6 1.4313 -0.1056 -2.4305 20 1 0.3746 0.1174 -2.2832 21 6 2.1943 1.1538 -2.8462 22 1 -0.3633 0.3980 0.9475 23 1 -0.3633 0.6216 -0.8185 24 1 -0.3633 -1.0195 -0.1291 25 1 1.6352 -0.2379 2.1385 26 1 1.7193 -1.7627 1.2240 27 1 4.0622 -2.2619 4.0243 28 1 0.6980 -2.2357 -0.6114 29 1 2.4049 -2.7307 -0.7748 30 1 2.0438 -3.3022 -2.9626 31 1 0.3233 -2.8459 -2.7862 32 1 -0.4223 -1.0692 -4.1785 33 1 0.7635 -0.1709 -5.1558 34 1 0.6658 -1.9435 -5.2830 35 1 3.2542 0.9200 -2.9463 36 1 1.8097 1.5130 -3.8007 37 1 2.0625 1.9254 -2.0877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015774.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:31 Heat of formation + Delta-G solvation = -30.721964 kcal Electronic energy + Delta-G solvation = -14993.656246 eV Core-core repulsion = 12769.437027 eV Total energy + Delta-G solvation = -2224.219219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66357 -36.34526 -34.41362 -32.27910 -31.38350 -29.25219 -27.80270 -25.35601 -24.74349 -22.98243 -20.67918 -19.76473 -18.36442 -17.20891 -16.54900 -16.16528 -15.36366 -15.07179 -14.69251 -14.27749 -13.89074 -13.81073 -13.55104 -13.23785 -13.18024 -12.79875 -12.63529 -12.46065 -12.38247 -12.30732 -12.11890 -11.90327 -11.53062 -11.42100 -11.14102 -11.06052 -10.92160 -10.49267 -8.94401 -8.11890 -6.17173 1.39728 1.40791 1.52676 2.45837 3.17734 3.29612 3.72331 3.85776 4.09560 4.18729 4.37676 4.45857 4.53178 4.54173 4.62109 4.70860 4.75596 4.85003 4.92407 4.96481 5.03648 5.15098 5.19262 5.20775 5.25927 5.28578 5.37375 5.46200 5.51323 5.58294 5.73526 5.88504 6.31906 6.35762 6.57178 6.97098 7.49029 9.00220 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036857 B = 0.008829 C = 0.008459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.501814 B = 3170.532985 C = 3309.231780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.086 3.914 3 H 0.062 0.938 4 C 0.035 3.965 5 C -0.501 4.501 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.508 5.508 14 C 0.041 3.959 15 C -0.120 4.120 16 C -0.087 4.087 17 H 0.074 0.926 18 C -0.133 4.133 19 C 0.051 3.949 20 H 0.060 0.940 21 C -0.129 4.129 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.052 0.948 25 H -0.011 1.011 26 H -0.005 1.005 27 H 0.259 0.741 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 2.291 -14.740 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.023 4.023 3 H 0.080 0.920 4 C -0.002 4.002 5 C -0.539 4.539 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.232 5.232 14 C -0.087 4.087 15 C -0.158 4.158 16 C -0.106 4.106 17 H 0.092 0.908 18 C -0.190 4.190 19 C -0.056 4.056 20 H 0.078 0.922 21 C -0.186 4.186 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.614 2.258 -14.574 15.780 hybrid contribution 0.180 -0.298 0.972 1.032 sum -5.434 1.961 -13.602 14.778 Atomic orbital electron populations 1.22412 0.97362 1.01645 1.02020 1.21686 0.92031 0.97507 0.91077 0.91990 1.19065 0.95361 0.94206 0.91568 1.21485 0.92979 1.33392 1.06068 0.92495 1.25873 1.03042 0.95611 0.95607 1.70095 1.37066 1.38802 1.12296 0.85563 0.80488 0.77464 0.78214 1.20009 1.21098 1.19268 1.64797 1.55252 1.01677 1.01484 1.22663 0.98188 0.90654 0.97194 1.22478 1.02047 0.98264 0.93045 1.22099 1.00367 0.93147 0.94953 0.90801 1.21720 0.97656 1.02548 0.97106 1.23074 0.97227 0.95453 0.89889 0.92210 1.21621 1.00175 0.95861 1.00991 0.92681 0.91026 0.92865 0.99244 0.98693 0.93236 0.94537 0.93874 0.91116 0.90316 0.92567 0.91538 0.91505 0.93325 0.90180 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.10 8.36 71.98 0.60 -5.50 16 2 C 0.09 3.64 2.37 44.91 0.11 3.75 16 3 H 0.06 2.70 7.67 -2.39 -0.02 2.68 16 4 C 0.04 1.90 4.23 29.85 0.13 2.02 16 5 C -0.50 -29.35 8.79 25.60 0.22 -29.13 16 6 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 9 Si 0.96 46.52 29.54 68.60 2.03 48.54 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.51 -19.90 4.70 -832.93 -3.91 -23.82 16 14 C 0.04 1.56 5.07 86.45 0.44 2.00 16 15 C -0.12 -3.36 6.50 31.47 0.20 -3.15 16 16 C -0.09 -2.19 3.11 -9.53 -0.03 -2.22 16 17 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 18 C -0.13 -2.42 9.15 71.98 0.66 -1.76 16 19 C 0.05 1.52 2.15 45.32 0.10 1.62 16 20 H 0.06 1.69 5.49 -2.39 -0.01 1.67 16 21 C -0.13 -3.50 9.47 71.98 0.68 -2.82 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 23 H 0.07 2.08 6.38 -2.38 -0.02 2.07 16 24 H 0.05 1.83 5.96 -2.39 -0.01 1.82 16 25 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.30 6.76 -2.39 -0.02 -0.32 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 28 H 0.04 1.41 5.28 -2.39 -0.01 1.40 16 29 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 1.89 7.85 -2.39 -0.02 1.87 16 32 H 0.06 0.99 8.13 -2.38 -0.02 0.97 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.25 7.70 -2.39 -0.02 1.23 16 Total: -1.00 -65.59 283.93 2.98 -62.61 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.01 Total: 6.34 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 3.57 Total: -35.05 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.63 Total: -82.44 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -65.59 2.98 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015774.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.888 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds