Wall clock time and date at job start Sun Mar 29 2020 21:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47128 * 2 1 4 4 C 1.52999 * 109.47219 * 120.00273 * 2 1 3 5 5 C 1.50694 * 109.47043 * 295.75272 * 4 2 1 6 6 H 1.07998 * 120.00594 * 355.31024 * 5 4 2 7 7 C 1.37877 * 119.99918 * 175.30986 * 5 4 2 8 8 N 1.31516 * 120.00074 * 359.72463 * 7 5 4 9 9 Si 1.86802 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47520 * 179.72302 * 9 7 5 11 11 H 1.48503 * 109.46886 * 299.72609 * 9 7 5 12 12 H 1.48503 * 109.47245 * 59.71982 * 9 7 5 13 13 N 1.46906 * 109.46465 * 240.00346 * 2 1 3 14 14 C 1.46907 * 110.99414 * 186.63886 * 13 2 1 15 15 C 1.46895 * 111.00143 * 62.68627 * 13 2 1 16 16 C 1.53004 * 109.46807 * 190.00046 * 15 13 2 17 17 C 1.52998 * 109.46738 * 179.97438 * 16 15 13 18 18 C 1.52996 * 117.49918 * 243.61603 * 17 16 15 19 19 C 1.53001 * 60.00326 * 252.51333 * 18 17 16 20 20 H 1.09008 * 109.47015 * 299.99674 * 1 2 3 21 21 H 1.08995 * 109.47460 * 59.99398 * 1 2 3 22 22 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46961 * 175.75294 * 4 2 1 24 24 H 1.08999 * 109.47205 * 55.75658 * 4 2 1 25 25 H 0.96997 * 119.99695 * 0.28037 * 8 7 5 26 26 H 1.08997 * 109.47028 * 66.61496 * 14 13 2 27 27 H 1.08997 * 109.46760 * 186.61770 * 14 13 2 28 28 H 1.09005 * 109.46863 * 306.61234 * 14 13 2 29 29 H 1.08996 * 109.46863 * 309.99208 * 15 13 2 30 30 H 1.08997 * 109.47445 * 69.99806 * 15 13 2 31 31 H 1.09005 * 109.46571 * 299.99178 * 16 15 13 32 32 H 1.08997 * 109.47314 * 59.99680 * 16 15 13 33 33 H 1.09007 * 115.55364 * 29.33042 * 17 16 15 34 34 H 1.09007 * 117.49860 * 0.02562 * 18 17 16 35 35 H 1.08999 * 117.50344 * 145.02185 * 18 17 16 36 36 H 1.08995 * 117.50109 * 252.51012 * 19 18 17 37 37 H 1.08997 * 117.50150 * 107.48731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6255 0.0472 2.4774 6 1 1.1216 0.9970 2.3757 7 6 1.8894 -0.4623 3.7311 8 7 2.4982 -1.6215 3.8551 9 14 1.3750 0.4899 5.2536 10 1 1.7648 -0.2703 6.4682 11 1 2.0484 1.8135 5.2607 12 1 -0.0973 0.6838 5.2422 13 7 2.0196 -0.6925 -1.1996 14 6 3.4794 -0.8509 -1.1569 15 6 1.6017 0.0098 -2.4202 16 6 1.9090 -0.8611 -3.6401 17 6 1.4732 -0.1299 -4.9115 18 6 0.3599 -0.7663 -5.7460 19 6 1.8033 -0.7874 -6.2530 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1274 -0.7877 1.2119 24 1 1.6160 -1.7247 1.2880 25 1 2.7651 -2.1161 3.0645 26 1 3.7476 -1.5307 -0.3481 27 1 3.8284 -1.2591 -2.1054 28 1 3.9454 0.1195 -0.9856 29 1 0.5309 0.2087 -2.3764 30 1 2.1434 0.9522 -2.5008 31 1 2.9798 -1.0600 -3.6840 32 1 1.3673 -1.8035 -3.5596 33 1 1.5066 0.9586 -4.8628 34 1 -0.0623 -1.7058 -5.3891 35 1 -0.3395 -0.0966 -6.2464 36 1 2.0536 -0.1317 -7.0868 37 1 2.3310 -1.7409 -6.2298 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591019609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:47 Heat of formation + Delta-G solvation = 7.650996 kcal Electronic energy + Delta-G solvation = -14170.244125 eV Core-core repulsion = 11947.688883 eV Total energy + Delta-G solvation = -2222.555243 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.36508 -37.04761 -33.58461 -31.40529 -29.51604 -27.06484 -24.89389 -23.50641 -22.48351 -21.70907 -20.33242 -19.11917 -16.80138 -15.87884 -15.14071 -14.88895 -14.15401 -13.86769 -13.67151 -13.54688 -12.76685 -12.25382 -11.92654 -11.66160 -11.57669 -11.45562 -11.22482 -11.15000 -10.77404 -10.74589 -10.71384 -10.27151 -10.09748 -9.98037 -9.75557 -9.36494 -8.52140 -8.27168 -7.72502 -6.31350 -3.99387 3.45791 3.47808 3.66448 3.70726 4.32002 4.59119 4.80764 4.85723 4.87758 5.27357 5.36720 5.45516 5.50961 5.65610 5.69842 5.76327 5.86042 5.90602 5.99624 6.01141 6.06595 6.20046 6.26898 6.31279 6.37636 6.49878 6.68451 6.85389 7.07018 7.35132 7.50745 7.71688 7.80236 8.29891 8.50803 8.93557 9.71998 11.09344 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070587 B = 0.005504 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.579128 B = 5086.205067 C = 5297.538345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.092 3.908 3 H 0.026 0.974 4 C 0.017 3.983 5 C -0.597 4.597 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.542 5.542 14 C 0.025 3.975 15 C 0.054 3.946 16 C -0.085 4.085 17 C -0.149 4.149 18 C -0.181 4.181 19 C -0.184 4.184 20 H 0.066 0.934 21 H 0.033 0.967 22 H 0.053 0.947 23 H 0.008 0.992 24 H 0.017 0.983 25 H 0.269 0.731 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 2.620 -15.832 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.015 4.015 3 H 0.044 0.956 4 C -0.021 4.021 5 C -0.636 4.636 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.550 5.550 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.266 5.266 14 C -0.123 4.123 15 C -0.075 4.075 16 C -0.123 4.123 17 C -0.168 4.168 18 C -0.218 4.218 19 C -0.221 4.221 20 H 0.085 0.915 21 H 0.052 0.948 22 H 0.072 0.928 23 H 0.026 0.974 24 H 0.035 0.965 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.999 2.112 -14.165 14.460 hybrid contribution 0.375 0.936 -1.749 2.019 sum -1.625 3.048 -15.914 16.285 Atomic orbital electron populations 1.21743 0.95200 1.01542 1.00117 1.21689 0.95127 0.95054 0.89665 0.95583 1.19327 0.95465 0.96128 0.91134 1.22003 1.42051 1.07376 0.92184 0.93393 1.25795 0.94838 0.96964 1.01257 1.70770 1.37439 1.13224 1.33569 0.83569 0.76102 0.75060 0.75687 1.20805 1.21577 1.21465 1.62116 1.11428 1.50960 1.02122 1.22392 0.88114 1.00169 1.01624 1.22114 1.00970 0.94546 0.89824 1.21208 1.01110 0.98663 0.91316 1.22330 1.03291 0.99189 0.91965 1.23024 0.91563 1.02896 1.04291 1.22944 0.98911 1.02719 0.97517 0.91484 0.94822 0.92813 0.97422 0.96485 0.92068 0.90811 0.92412 0.96233 0.90601 0.95765 0.91722 0.91122 0.88093 0.88721 0.89158 0.89150 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.86 37.16 0.33 -2.25 16 2 C 0.09 2.00 2.09 -67.71 -0.14 1.86 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.02 0.44 3.50 -27.89 -0.10 0.34 16 5 C -0.60 -17.08 8.31 -34.44 -0.29 -17.37 16 6 H 0.05 1.35 7.19 -52.49 -0.38 0.97 16 7 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 8 N -0.91 -28.32 13.65 55.43 0.76 -27.56 16 9 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.54 -10.17 4.63 -234.88 -1.09 -11.26 16 14 C 0.03 0.45 8.72 60.07 0.52 0.97 16 15 C 0.05 0.83 4.76 -3.82 -0.02 0.81 16 16 C -0.09 -1.10 5.44 -26.73 -0.15 -1.25 16 17 C -0.15 -1.64 5.74 -90.62 -0.52 -2.16 16 18 C -0.18 -1.79 10.18 -26.73 -0.27 -2.06 16 19 C -0.18 -1.76 10.25 -26.73 -0.27 -2.03 16 20 H 0.07 1.42 7.00 -51.92 -0.36 1.06 16 21 H 0.03 0.57 6.26 -51.93 -0.33 0.25 16 22 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.01 0.21 6.21 -51.93 -0.32 -0.11 16 24 H 0.02 0.47 7.82 -51.93 -0.41 0.07 16 25 H 0.27 8.34 7.19 -40.82 -0.29 8.05 16 26 H 0.07 1.42 6.53 -51.93 -0.34 1.08 16 27 H 0.06 0.86 6.07 -51.93 -0.32 0.55 16 28 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.08 1.17 5.93 -51.93 -0.31 0.86 16 30 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.06 0.83 6.36 -51.93 -0.33 0.50 16 32 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 33 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.09 0.94 8.03 -51.92 -0.42 0.53 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -30.23 290.30 -8.42 -38.65 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.38 Total: -1.86 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -1.00 Total: -22.81 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.33 Total: -38.82 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.23 -8.42 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591019609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.299 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds