Wall clock time and date at job start Sun Mar 29 2020 21:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47128 * 2 1 4 4 C 1.52999 * 109.47219 * 120.00273 * 2 1 3 5 5 C 1.50694 * 109.47043 * 295.75272 * 4 2 1 6 6 H 1.07998 * 120.00594 * 355.31024 * 5 4 2 7 7 C 1.37877 * 119.99918 * 175.30986 * 5 4 2 8 8 N 1.31516 * 120.00074 * 359.72463 * 7 5 4 9 9 Si 1.86802 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47520 * 179.72302 * 9 7 5 11 11 H 1.48503 * 109.46886 * 299.72609 * 9 7 5 12 12 H 1.48503 * 109.47245 * 59.71982 * 9 7 5 13 13 N 1.46906 * 109.46465 * 240.00346 * 2 1 3 14 14 C 1.46907 * 110.99414 * 186.63886 * 13 2 1 15 15 C 1.46895 * 111.00143 * 62.68627 * 13 2 1 16 16 C 1.53004 * 109.46807 * 190.00046 * 15 13 2 17 17 C 1.52998 * 109.46738 * 179.97438 * 16 15 13 18 18 C 1.52996 * 117.49918 * 243.61603 * 17 16 15 19 19 C 1.53001 * 60.00326 * 252.51333 * 18 17 16 20 20 H 1.09008 * 109.47015 * 299.99674 * 1 2 3 21 21 H 1.08995 * 109.47460 * 59.99398 * 1 2 3 22 22 H 1.09002 * 109.47018 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46961 * 175.75294 * 4 2 1 24 24 H 1.08999 * 109.47205 * 55.75658 * 4 2 1 25 25 H 0.96997 * 119.99695 * 0.28037 * 8 7 5 26 26 H 1.08997 * 109.47028 * 66.61496 * 14 13 2 27 27 H 1.08997 * 109.46760 * 186.61770 * 14 13 2 28 28 H 1.09005 * 109.46863 * 306.61234 * 14 13 2 29 29 H 1.08996 * 109.46863 * 309.99208 * 15 13 2 30 30 H 1.08997 * 109.47445 * 69.99806 * 15 13 2 31 31 H 1.09005 * 109.46571 * 299.99178 * 16 15 13 32 32 H 1.08997 * 109.47314 * 59.99680 * 16 15 13 33 33 H 1.09007 * 115.55364 * 29.33042 * 17 16 15 34 34 H 1.09007 * 117.49860 * 0.02562 * 18 17 16 35 35 H 1.08999 * 117.50344 * 145.02185 * 18 17 16 36 36 H 1.08995 * 117.50109 * 252.51012 * 19 18 17 37 37 H 1.08997 * 117.50150 * 107.48731 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6255 0.0472 2.4774 6 1 1.1216 0.9970 2.3757 7 6 1.8894 -0.4623 3.7311 8 7 2.4982 -1.6215 3.8551 9 14 1.3750 0.4899 5.2536 10 1 1.7648 -0.2703 6.4682 11 1 2.0484 1.8135 5.2607 12 1 -0.0973 0.6838 5.2422 13 7 2.0196 -0.6925 -1.1996 14 6 3.4794 -0.8509 -1.1569 15 6 1.6017 0.0098 -2.4202 16 6 1.9090 -0.8611 -3.6401 17 6 1.4732 -0.1299 -4.9115 18 6 0.3599 -0.7663 -5.7460 19 6 1.8033 -0.7874 -6.2530 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1274 -0.7877 1.2119 24 1 1.6160 -1.7247 1.2880 25 1 2.7651 -2.1161 3.0645 26 1 3.7476 -1.5307 -0.3481 27 1 3.8284 -1.2591 -2.1054 28 1 3.9454 0.1195 -0.9856 29 1 0.5309 0.2087 -2.3764 30 1 2.1434 0.9522 -2.5008 31 1 2.9798 -1.0600 -3.6840 32 1 1.3673 -1.8035 -3.5596 33 1 1.5066 0.9586 -4.8628 34 1 -0.0623 -1.7058 -5.3891 35 1 -0.3395 -0.0966 -6.2464 36 1 2.0536 -0.1317 -7.0868 37 1 2.3310 -1.7409 -6.2298 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591019609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:46 Heat of formation + Delta-G solvation = -10.165329 kcal Electronic energy + Delta-G solvation = -14171.016699 eV Core-core repulsion = 11947.688883 eV Total energy + Delta-G solvation = -2223.327816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.71036 -38.15062 -35.58712 -33.13265 -30.86064 -28.94475 -26.40497 -25.48588 -23.32192 -23.09118 -21.29879 -20.80930 -18.93879 -17.14328 -16.35547 -16.15066 -15.77148 -15.50357 -15.38890 -14.68255 -14.32514 -14.07216 -13.62539 -13.23501 -13.07157 -12.71468 -12.58838 -12.41647 -12.30257 -12.17089 -12.04504 -11.93211 -11.86049 -11.28441 -11.05850 -10.71831 -10.62915 -10.50987 -9.25637 -8.66278 -6.35458 1.52674 1.61362 1.80374 2.56948 2.87413 3.03140 3.18565 3.83400 3.99733 4.02159 4.11278 4.20607 4.23950 4.32962 4.49851 4.54816 4.58022 4.71513 4.76246 4.80744 4.88747 4.97313 5.05012 5.08800 5.10733 5.14075 5.26724 5.29012 5.30669 5.43952 5.52333 5.90401 6.19487 6.21759 6.27931 6.60950 7.45823 8.74355 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.070587 B = 0.005504 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.579128 B = 5086.205067 C = 5297.538345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.099 3.901 3 H 0.018 0.982 4 C 0.023 3.977 5 C -0.609 4.609 6 H 0.052 0.948 7 C -0.039 4.039 8 N -0.939 5.939 9 Si 1.117 2.883 10 H -0.284 1.284 11 H -0.270 1.270 12 H -0.268 1.268 13 N -0.550 5.550 14 C 0.028 3.972 15 C 0.056 3.944 16 C -0.076 4.076 17 C -0.161 4.161 18 C -0.180 4.180 19 C -0.175 4.175 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.045 0.955 23 H -0.010 1.010 24 H -0.011 1.011 25 H 0.254 0.746 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.016 0.984 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 3.815 -17.140 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 H 0.036 0.964 4 C -0.014 4.014 5 C -0.647 4.647 6 H 0.070 0.930 7 C -0.236 4.236 8 N -0.577 5.577 9 Si 0.938 3.062 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.193 1.193 13 N -0.275 5.275 14 C -0.120 4.120 15 C -0.072 4.072 16 C -0.114 4.114 17 C -0.180 4.180 18 C -0.217 4.217 19 C -0.212 4.212 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.008 0.992 24 H 0.007 0.993 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.735 3.311 -15.515 16.098 hybrid contribution 0.629 0.539 -1.420 1.644 sum -2.106 3.850 -16.935 17.494 Atomic orbital electron populations 1.21648 0.93783 1.01317 1.01072 1.21443 0.96219 0.93934 0.89260 0.96438 1.19196 0.94215 0.94917 0.93106 1.22389 1.41499 1.07594 0.93244 0.93010 1.27398 0.94088 0.97011 1.05093 1.70911 1.39417 1.14520 1.32804 0.82947 0.77081 0.74421 0.71775 1.20997 1.19502 1.19284 1.62074 1.11960 1.51159 1.02282 1.22365 0.87705 0.99541 1.02372 1.22196 1.01037 0.94937 0.89011 1.21091 1.01111 0.98016 0.91144 1.22247 1.04815 0.99272 0.91641 1.23100 0.91927 1.02853 1.03817 1.23028 0.98545 1.02801 0.96835 0.92898 0.91459 0.93577 0.99176 0.99300 0.93692 0.93350 0.89271 0.96584 0.90333 0.95376 0.91618 0.91825 0.87694 0.89006 0.87966 0.87731 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 8.86 71.98 0.64 -4.11 16 2 C 0.10 4.33 2.09 44.91 0.09 4.42 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.02 1.24 3.50 29.85 0.10 1.34 16 5 C -0.61 -35.24 8.31 25.60 0.21 -35.03 16 6 H 0.05 2.90 7.19 -2.91 -0.02 2.88 16 7 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 8 N -0.94 -59.55 13.65 21.45 0.29 -59.25 16 9 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 N -0.55 -20.38 4.63 -897.03 -4.15 -24.53 16 14 C 0.03 1.00 8.72 127.69 1.11 2.11 16 15 C 0.06 1.62 4.76 86.31 0.41 2.03 16 16 C -0.08 -1.82 5.44 30.60 0.17 -1.65 16 17 C -0.16 -3.14 5.74 -10.79 -0.06 -3.20 16 18 C -0.18 -3.11 10.18 30.59 0.31 -2.79 16 19 C -0.18 -2.86 10.25 30.60 0.31 -2.55 16 20 H 0.05 2.20 7.00 -2.38 -0.02 2.19 16 21 H 0.07 2.17 6.26 -2.39 -0.01 2.16 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 H -0.01 -0.56 6.21 -2.39 -0.01 -0.58 16 24 H -0.01 -0.67 7.82 -2.39 -0.02 -0.69 16 25 H 0.25 16.42 7.19 -92.71 -0.67 15.75 16 26 H 0.05 1.93 6.53 -2.39 -0.02 1.91 16 27 H 0.09 2.54 6.07 -2.39 -0.01 2.53 16 28 H 0.02 0.56 8.12 -2.38 -0.02 0.54 16 29 H 0.08 2.24 5.93 -2.39 -0.01 2.23 16 30 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.07 1.54 6.36 -2.38 -0.02 1.53 16 32 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 33 H 0.10 1.98 8.08 -2.38 -0.02 1.96 16 34 H 0.09 1.64 8.03 -2.38 -0.02 1.62 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -65.25 290.30 3.07 -62.18 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.12 Total: 9.89 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.77 Total: -41.26 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -3.86 Total: -83.78 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -65.25 3.07 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591019609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.015 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds