Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47825 * 2 1 4 4 C 1.53003 * 109.47048 * 239.99609 * 2 1 3 5 5 C 1.50707 * 109.46991 * 176.23794 * 4 2 1 6 6 H 1.07997 * 119.99993 * 355.27115 * 5 4 2 7 7 C 1.37884 * 119.99653 * 175.26495 * 5 4 2 8 8 N 1.31515 * 119.99608 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99997 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47336 * 89.99678 * 9 7 5 11 11 H 1.48504 * 109.47109 * 209.99841 * 9 7 5 12 12 H 1.48505 * 109.47465 * 329.99459 * 9 7 5 13 13 N 1.46906 * 109.47213 * 120.00025 * 2 1 3 14 14 C 1.46893 * 110.99848 * 289.61088 * 13 2 1 15 15 C 1.46898 * 110.99990 * 53.56325 * 13 2 1 16 16 C 1.52992 * 109.47183 * 170.00155 * 15 13 2 17 17 C 1.53001 * 109.47174 * 179.97438 * 16 15 13 18 18 C 1.53001 * 117.50094 * 243.62185 * 17 16 15 19 19 C 1.53002 * 60.00046 * 252.51123 * 18 17 16 20 20 H 1.08997 * 109.46981 * 59.99917 * 1 2 3 21 21 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46926 * 300.00571 * 1 2 3 23 23 H 1.08996 * 109.47737 * 296.23900 * 4 2 1 24 24 H 1.08996 * 109.46845 * 56.24566 * 4 2 1 25 25 H 0.96995 * 119.99589 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47379 * 66.22319 * 14 13 2 27 27 H 1.08997 * 109.47265 * 186.22048 * 14 13 2 28 28 H 1.09002 * 109.47298 * 306.22186 * 14 13 2 29 29 H 1.08999 * 109.47399 * 290.00518 * 15 13 2 30 30 H 1.09005 * 109.47322 * 50.00077 * 15 13 2 31 31 H 1.09001 * 109.47281 * 299.99912 * 16 15 13 32 32 H 1.08997 * 109.47040 * 60.00429 * 16 15 13 33 33 H 1.09001 * 115.54909 * 29.32997 * 17 16 15 34 34 H 1.08993 * 117.49604 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49999 * 145.01833 * 18 17 16 36 36 H 1.09000 * 117.49513 * 252.50846 * 19 18 17 37 37 H 1.09002 * 117.49892 * 107.48840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5442 -0.6411 -1.2967 6 1 4.0777 -0.0629 -0.5569 7 6 4.2391 -1.3060 -2.2847 8 7 5.5518 -1.2364 -2.3258 9 14 3.3161 -2.3056 -3.5647 10 1 2.9858 -1.4398 -4.7250 11 1 4.1660 -3.4364 -4.0168 12 1 2.0629 -2.8354 -2.9697 13 7 2.0197 -0.6925 1.1995 14 6 1.7612 0.1014 2.4081 15 6 1.4272 -2.0320 1.3128 16 6 2.1386 -2.8123 2.4199 17 6 1.5211 -4.2071 2.5383 18 6 0.8196 -4.5600 3.8514 19 6 2.1736 -5.1880 3.5147 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.7328 -1.7666 -1.2162 24 1 1.6227 -0.2479 -2.1379 25 1 6.0406 -1.7038 -3.0211 26 1 0.6861 0.1719 2.5734 27 1 2.2299 -0.3802 3.2662 28 1 2.1757 1.1015 2.2814 29 1 0.3683 -1.9416 1.5548 30 1 1.5397 -2.5603 0.3660 31 1 3.1976 -2.9027 2.1778 32 1 2.0261 -2.2840 3.3666 33 1 1.1031 -4.6159 1.6184 34 1 0.7984 -3.7986 4.6310 35 1 -0.0603 -5.2009 3.7955 36 1 2.1844 -6.2420 3.2373 37 1 3.0427 -4.8395 4.0726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591019610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = 18.169239 kcal Electronic energy + Delta-G solvation = -14540.632019 eV Core-core repulsion = 12318.532881 eV Total energy + Delta-G solvation = -2222.099137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.37524 -36.96030 -32.92138 -31.43343 -29.52723 -27.67422 -25.37004 -23.21465 -22.29974 -21.69237 -20.15970 -18.59612 -16.54277 -15.70870 -15.13091 -14.81316 -14.24412 -14.06634 -13.45656 -13.31157 -12.50017 -12.43523 -12.02246 -11.78290 -11.55850 -11.52152 -11.43010 -11.11419 -10.95236 -10.59931 -10.52461 -10.31561 -9.90288 -9.65081 -9.54863 -9.48537 -8.97240 -8.39214 -7.45054 -5.87616 -3.81127 3.37272 3.45060 3.47027 3.91870 4.49657 4.56899 4.96172 5.05480 5.08129 5.44403 5.47061 5.61585 5.67174 5.67943 5.75594 5.82532 5.89865 5.94158 5.97167 6.03115 6.07099 6.16666 6.29598 6.33826 6.44778 6.51667 6.68487 6.70824 6.83591 7.17302 7.36952 7.84914 7.88899 8.02302 8.75671 9.24619 9.75374 11.26609 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.009476 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.737855 B = 2954.183030 C = 3509.457650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.095 3.905 3 H 0.074 0.926 4 C -0.009 4.009 5 C -0.487 4.487 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.908 5.908 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.513 5.513 14 C 0.024 3.976 15 C 0.061 3.939 16 C -0.085 4.085 17 C -0.145 4.145 18 C -0.186 4.186 19 C -0.182 4.182 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.019 0.981 24 H 0.012 0.988 25 H 0.259 0.741 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -3.479 9.818 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.013 4.013 3 H 0.092 0.908 4 C -0.047 4.047 5 C -0.525 4.525 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.236 5.236 14 C -0.125 4.125 15 C -0.067 4.067 16 C -0.123 4.123 17 C -0.163 4.163 18 C -0.223 4.223 19 C -0.219 4.219 20 H 0.074 0.926 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.637 -3.588 9.668 14.114 hybrid contribution -1.290 -0.531 -0.672 1.548 sum -10.927 -4.119 8.995 14.741 Atomic orbital electron populations 1.22556 0.99768 1.01324 1.00886 1.21694 0.89832 0.98376 0.91418 0.90797 1.19724 0.98017 0.95396 0.91541 1.21037 0.89185 1.30037 1.12287 0.90429 1.25003 0.94657 0.96568 0.97571 1.69913 1.06109 1.44432 1.34446 0.86917 0.80209 0.80432 0.82454 1.20638 1.21627 1.19306 1.62030 1.58252 1.01779 1.01525 1.22396 0.97801 0.98434 0.93853 1.22069 0.94617 0.90581 0.99465 1.21185 1.00900 0.91709 0.98498 1.22345 1.03233 0.96877 0.93883 1.23010 0.95866 1.03818 0.99608 1.22932 0.96368 0.98429 1.04197 0.92609 0.92920 0.93797 0.96287 0.96978 0.93119 0.96757 0.92138 0.92017 0.95915 0.90037 0.90263 0.92448 0.87947 0.89130 0.89379 0.89159 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.45 37.16 0.31 -2.77 16 2 C 0.09 1.91 2.27 -67.71 -0.15 1.75 16 3 H 0.07 1.52 7.98 -51.93 -0.41 1.11 16 4 C -0.01 -0.22 3.46 -27.88 -0.10 -0.32 16 5 C -0.49 -13.95 9.36 -34.43 -0.32 -14.28 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.72 16 8 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 9 Si 0.87 22.09 27.56 -169.99 -4.69 17.40 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.51 6.41 56.52 0.36 -6.14 16 13 N -0.51 -9.87 4.39 -234.89 -1.03 -10.90 16 14 C 0.02 0.38 8.95 60.06 0.54 0.91 16 15 C 0.06 1.06 3.85 -3.83 -0.01 1.04 16 16 C -0.09 -1.33 5.42 -26.73 -0.14 -1.47 16 17 C -0.14 -1.96 5.74 -90.62 -0.52 -2.48 16 18 C -0.19 -2.12 10.18 -26.73 -0.27 -2.39 16 19 C -0.18 -2.18 10.25 -26.73 -0.27 -2.45 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.86 6.55 -51.93 -0.34 0.52 16 22 H 0.04 0.65 6.84 -51.93 -0.36 0.30 16 23 H 0.02 0.46 4.95 -51.93 -0.26 0.20 16 24 H 0.01 0.29 7.80 -51.93 -0.41 -0.12 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.01 0.21 6.89 -51.93 -0.36 -0.15 16 27 H 0.06 0.88 6.58 -51.93 -0.34 0.54 16 28 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 29 H 0.02 0.37 6.81 -51.93 -0.35 0.02 16 30 H 0.08 1.61 6.04 -51.93 -0.31 1.29 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.06 0.82 6.33 -51.93 -0.33 0.49 16 33 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 34 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -30.51 287.82 -8.08 -38.58 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.43 Total: -0.88 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.04 Total: -20.74 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.26 Total: -38.71 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.69 Total: 17.40 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.51 -8.08 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591019610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.753 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds