Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47825 * 2 1 4 4 C 1.53003 * 109.47048 * 239.99609 * 2 1 3 5 5 C 1.50707 * 109.46991 * 176.23794 * 4 2 1 6 6 H 1.07997 * 119.99993 * 355.27115 * 5 4 2 7 7 C 1.37884 * 119.99653 * 175.26495 * 5 4 2 8 8 N 1.31515 * 119.99608 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99997 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47336 * 89.99678 * 9 7 5 11 11 H 1.48504 * 109.47109 * 209.99841 * 9 7 5 12 12 H 1.48505 * 109.47465 * 329.99459 * 9 7 5 13 13 N 1.46906 * 109.47213 * 120.00025 * 2 1 3 14 14 C 1.46893 * 110.99848 * 289.61088 * 13 2 1 15 15 C 1.46898 * 110.99990 * 53.56325 * 13 2 1 16 16 C 1.52992 * 109.47183 * 170.00155 * 15 13 2 17 17 C 1.53001 * 109.47174 * 179.97438 * 16 15 13 18 18 C 1.53001 * 117.50094 * 243.62185 * 17 16 15 19 19 C 1.53002 * 60.00046 * 252.51123 * 18 17 16 20 20 H 1.08997 * 109.46981 * 59.99917 * 1 2 3 21 21 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46926 * 300.00571 * 1 2 3 23 23 H 1.08996 * 109.47737 * 296.23900 * 4 2 1 24 24 H 1.08996 * 109.46845 * 56.24566 * 4 2 1 25 25 H 0.96995 * 119.99589 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47379 * 66.22319 * 14 13 2 27 27 H 1.08997 * 109.47265 * 186.22048 * 14 13 2 28 28 H 1.09002 * 109.47298 * 306.22186 * 14 13 2 29 29 H 1.08999 * 109.47399 * 290.00518 * 15 13 2 30 30 H 1.09005 * 109.47322 * 50.00077 * 15 13 2 31 31 H 1.09001 * 109.47281 * 299.99912 * 16 15 13 32 32 H 1.08997 * 109.47040 * 60.00429 * 16 15 13 33 33 H 1.09001 * 115.54909 * 29.32997 * 17 16 15 34 34 H 1.08993 * 117.49604 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49999 * 145.01833 * 18 17 16 36 36 H 1.09000 * 117.49513 * 252.50846 * 19 18 17 37 37 H 1.09002 * 117.49892 * 107.48840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5442 -0.6411 -1.2967 6 1 4.0777 -0.0629 -0.5569 7 6 4.2391 -1.3060 -2.2847 8 7 5.5518 -1.2364 -2.3258 9 14 3.3161 -2.3056 -3.5647 10 1 2.9858 -1.4398 -4.7250 11 1 4.1660 -3.4364 -4.0168 12 1 2.0629 -2.8354 -2.9697 13 7 2.0197 -0.6925 1.1995 14 6 1.7612 0.1014 2.4081 15 6 1.4272 -2.0320 1.3128 16 6 2.1386 -2.8123 2.4199 17 6 1.5211 -4.2071 2.5383 18 6 0.8196 -4.5600 3.8514 19 6 2.1736 -5.1880 3.5147 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.7328 -1.7666 -1.2162 24 1 1.6227 -0.2479 -2.1379 25 1 6.0406 -1.7038 -3.0211 26 1 0.6861 0.1719 2.5734 27 1 2.2299 -0.3802 3.2662 28 1 2.1757 1.1015 2.2814 29 1 0.3683 -1.9416 1.5548 30 1 1.5397 -2.5603 0.3660 31 1 3.1976 -2.9027 2.1778 32 1 2.0261 -2.2840 3.3666 33 1 1.1031 -4.6159 1.6184 34 1 0.7984 -3.7986 4.6310 35 1 -0.0603 -5.2009 3.7955 36 1 2.1844 -6.2420 3.2373 37 1 3.0427 -4.8395 4.0726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591019610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = -0.644280 kcal Electronic energy + Delta-G solvation = -14541.447834 eV Core-core repulsion = 12318.532881 eV Total energy + Delta-G solvation = -2222.914953 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.75041 -38.09020 -34.96420 -33.13529 -30.96340 -29.39475 -26.72240 -24.85934 -23.45873 -23.15232 -21.27808 -20.15374 -18.77299 -16.92383 -16.54117 -16.42013 -15.78866 -15.47616 -14.84923 -14.62541 -14.36443 -14.04297 -13.68389 -13.27105 -13.04184 -12.77808 -12.60160 -12.41159 -12.34901 -12.20859 -11.95815 -11.78189 -11.60245 -11.34451 -11.03504 -10.99447 -10.69869 -10.65349 -8.85277 -8.16662 -6.15067 1.36085 1.38195 1.48657 2.42160 2.93905 3.11448 3.25472 3.87499 4.04325 4.11038 4.14988 4.24924 4.35308 4.46381 4.55795 4.63160 4.70194 4.72820 4.78162 4.80713 4.94647 5.04372 5.08298 5.12210 5.15259 5.19478 5.28776 5.29175 5.35761 5.47103 5.56177 5.76382 6.39062 6.48148 6.56636 6.92222 7.45003 9.01061 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.024034 B = 0.009476 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.737855 B = 2954.183030 C = 3509.457650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.060 0.940 4 C -0.007 4.007 5 C -0.487 4.487 6 H 0.033 0.967 7 C -0.003 4.003 8 N -0.959 5.959 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.249 1.249 13 N -0.547 5.547 14 C 0.027 3.973 15 C 0.067 3.933 16 C -0.076 4.076 17 C -0.167 4.167 18 C -0.166 4.166 19 C -0.183 4.183 20 H 0.064 0.936 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.020 0.980 24 H 0.018 0.982 25 H 0.260 0.740 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.974 -4.305 10.445 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.078 0.922 4 C -0.044 4.044 5 C -0.525 4.525 6 H 0.051 0.949 7 C -0.198 4.198 8 N -0.602 5.602 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.172 1.172 13 N -0.270 5.270 14 C -0.121 4.121 15 C -0.061 4.061 16 C -0.114 4.114 17 C -0.186 4.186 18 C -0.202 4.202 19 C -0.220 4.220 20 H 0.083 0.917 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.327 -4.405 10.311 16.663 hybrid contribution -0.384 -0.214 -0.787 0.901 sum -12.711 -4.619 9.525 16.542 Atomic orbital electron populations 1.22400 0.96422 1.02061 1.02431 1.21512 0.92428 0.96984 0.90310 0.92175 1.19672 0.94638 0.96092 0.94020 1.21271 0.91807 1.28705 1.10758 0.94908 1.25936 0.95476 0.98131 1.00246 1.70085 1.08145 1.46128 1.35797 0.85782 0.79338 0.78689 0.79516 1.19422 1.21555 1.17249 1.61936 1.59684 1.02956 1.02472 1.22393 0.99228 0.97822 0.92612 1.22001 0.95841 0.89596 0.98673 1.21053 0.98824 0.93141 0.98367 1.22255 1.05239 0.96093 0.94989 1.23091 0.95939 1.03526 0.97682 1.23023 0.97007 0.98665 1.03302 0.91700 0.92492 0.91672 0.96150 0.96357 0.93093 0.94629 0.91143 0.92370 0.93910 0.92854 0.93579 0.91087 0.88422 0.88285 0.87719 0.88085 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 8.45 71.98 0.61 -4.66 16 2 C 0.10 3.78 2.27 44.91 0.10 3.88 16 3 H 0.06 2.49 7.98 -2.39 -0.02 2.47 16 4 C -0.01 -0.32 3.46 29.85 0.10 -0.22 16 5 C -0.49 -28.71 9.36 25.60 0.24 -28.47 16 6 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 7 C 0.00 -0.19 5.47 84.66 0.46 0.27 16 8 N -0.96 -62.31 13.96 21.45 0.30 -62.01 16 9 Si 0.94 45.74 27.56 68.60 1.89 47.63 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.25 -11.19 6.41 99.48 0.64 -10.55 16 13 N -0.55 -20.79 4.39 -897.06 -3.94 -24.73 16 14 C 0.03 0.82 8.95 127.69 1.14 1.96 16 15 C 0.07 2.26 3.85 86.30 0.33 2.59 16 16 C -0.08 -2.32 5.42 30.59 0.17 -2.16 16 17 C -0.17 -4.29 5.74 -10.79 -0.06 -4.35 16 18 C -0.17 -3.28 10.18 30.60 0.31 -2.97 16 19 C -0.18 -4.03 10.25 30.60 0.31 -3.72 16 20 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.06 1.67 6.55 -2.39 -0.02 1.66 16 22 H 0.06 1.70 6.84 -2.39 -0.02 1.68 16 23 H 0.02 0.97 4.95 -2.39 -0.01 0.96 16 24 H 0.02 0.84 7.80 -2.39 -0.02 0.83 16 25 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 26 H 0.04 0.91 6.89 -2.39 -0.02 0.90 16 27 H 0.07 1.94 6.58 -2.39 -0.02 1.93 16 28 H 0.06 1.76 8.00 -2.39 -0.02 1.74 16 29 H 0.04 1.27 6.81 -2.39 -0.02 1.26 16 30 H 0.05 2.09 6.04 -2.38 -0.01 2.08 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.93 6.33 -2.39 -0.02 1.91 16 33 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 34 H 0.10 1.81 8.03 -2.39 -0.02 1.79 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -67.23 287.82 2.92 -64.32 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.94 Total: 12.62 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.72 Total: -37.83 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -3.64 Total: -86.74 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.89 Total: 47.63 kcal Total: -67.23 2.92 -64.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591019610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.674 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds