Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47001 * 270.00489 * 3 2 1 5 5 H 1.48502 * 109.46925 * 30.00785 * 3 2 1 6 6 H 1.48500 * 109.46967 * 150.00333 * 3 2 1 7 7 C 1.37883 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99918 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99767 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00194 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47331 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47298 * 180.02562 * 12 11 10 14 14 N 1.29027 * 124.91534 * 90.30653 * 13 12 11 15 15 C 1.31784 * 117.12400 * 180.22644 * 14 13 12 16 16 C 1.33641 * 114.49781 * 359.48088 * 15 14 13 17 17 S 1.70983 * 124.91700 * 269.99604 * 13 12 11 18 18 H 0.97008 * 119.99502 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47214 * 59.99948 * 9 7 2 20 20 H 1.09004 * 109.47221 * 299.99797 * 9 7 2 21 21 H 1.00904 * 110.99371 * 56.04611 * 10 9 7 22 22 H 1.08999 * 109.47494 * 60.00312 * 11 10 9 23 23 H 1.08998 * 109.47145 * 299.99951 * 11 10 9 24 24 H 1.09003 * 109.47062 * 59.99568 * 12 11 10 25 25 H 1.09006 * 109.46638 * 300.00206 * 12 11 10 26 26 H 1.08002 * 122.75368 * 179.75456 * 15 14 13 27 27 H 1.08001 * 126.03830 * 180.26907 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 4.0011 -2.5792 -0.0010 11 6 5.4695 -2.6185 -0.0022 12 6 5.9408 -4.0741 -0.0027 13 6 7.4472 -4.1143 -0.0032 14 7 8.1857 -4.1400 1.0545 15 6 9.4910 -4.1692 0.8754 16 6 9.8746 -4.1792 -0.4047 17 16 8.4250 -4.1403 -1.4056 18 1 -0.4850 0.8402 0.0004 19 1 3.8752 -0.6806 0.8888 20 1 3.8745 -0.6802 -0.8912 21 1 3.6252 -3.0956 -0.7822 22 1 5.8472 -2.1143 0.8873 23 1 5.8457 -2.1149 -0.8926 24 1 5.5631 -4.5780 -0.8924 25 1 5.5645 -4.5781 0.8876 26 1 10.1931 -4.1882 1.6958 27 1 10.8932 -4.2064 -0.7626 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591728805.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = 40.126581 kcal Electronic energy + Delta-G solvation = -11268.389261 eV Core-core repulsion = 9152.903037 eV Total energy + Delta-G solvation = -2115.486225 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.71348 -36.05790 -33.03709 -31.72449 -29.13858 -26.85740 -24.40619 -22.04685 -21.13248 -19.91795 -18.00660 -16.80707 -15.70159 -15.31463 -14.66959 -14.46184 -13.94649 -13.79904 -12.99552 -12.68109 -12.34516 -12.20025 -11.61209 -11.45947 -10.99324 -10.66499 -10.46345 -9.84168 -9.66262 -9.49509 -9.30481 -8.94364 -8.60727 -7.55793 -6.06623 -4.04792 0.61790 1.27601 1.66641 2.76280 3.28253 3.36036 3.39276 4.07461 4.41677 4.87698 5.02021 5.22780 5.26198 5.27657 5.38656 5.54588 5.74530 6.06569 6.19131 6.26296 6.75462 6.98477 7.57992 7.68260 7.83726 8.28136 8.62579 9.01225 9.55085 11.06583 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.062547 B = 0.005519 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.558874 B = 5071.920579 C = 5199.642471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.678 5.678 11 C 0.065 3.935 12 C -0.046 4.046 13 C 0.070 3.930 14 N -0.477 5.477 15 C 0.041 3.959 16 C -0.271 4.271 17 S 0.112 5.888 18 H 0.264 0.736 19 H 0.028 0.972 20 H -0.019 1.019 21 H 0.336 0.664 22 H 0.071 0.929 23 H 0.021 0.979 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.174 0.826 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.896 -7.749 -2.999 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.309 5.309 11 C -0.066 4.066 12 C -0.087 4.087 13 C -0.209 4.209 14 N -0.191 5.191 15 C -0.110 4.110 16 C -0.410 4.410 17 S 0.366 5.634 18 H 0.074 0.926 19 H 0.046 0.954 20 H -0.002 1.002 21 H 0.153 0.847 22 H 0.090 0.910 23 H 0.039 0.961 24 H 0.103 0.897 25 H 0.123 0.877 26 H 0.191 0.809 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 18.237 -7.687 -2.859 19.996 hybrid contribution 1.380 1.236 -0.200 1.863 sum 19.617 -6.451 -3.059 20.876 Atomic orbital electron populations 1.69901 1.06152 1.26910 1.50880 1.24906 0.94763 0.98962 0.94691 0.86821 0.80380 0.83845 0.78456 1.20325 1.21088 1.19147 1.21052 0.88843 0.94888 1.50745 0.90183 1.20019 0.96717 0.84689 0.94914 1.60473 1.03789 1.17121 1.49495 1.21875 0.91047 0.93230 1.00488 1.20352 0.83818 0.99572 1.04948 1.27261 1.01824 1.01328 0.90471 1.66320 1.04764 1.16411 1.31603 1.21846 0.91308 1.01606 0.96279 1.27040 1.03105 1.14189 0.96680 1.84079 0.98052 1.67876 1.13417 0.92615 0.95442 1.00176 0.84696 0.91010 0.96071 0.89694 0.87681 0.80882 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 15 7 C -0.52 -14.87 9.87 -34.44 -0.34 -15.21 15 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 15 9 C 0.16 4.03 4.51 -4.98 -0.02 4.01 15 10 N -0.68 -13.93 6.49 -115.06 -0.75 -14.68 15 11 C 0.07 1.10 5.67 -3.83 -0.02 1.08 15 12 C -0.05 -0.63 6.06 -27.89 -0.17 -0.80 15 13 C 0.07 0.94 6.64 -13.46 -0.09 0.85 15 14 N -0.48 -6.82 10.54 -11.86 -0.13 -6.95 15 15 C 0.04 0.46 11.35 -19.18 -0.22 0.24 15 16 C -0.27 -2.66 11.37 29.12 0.33 -2.33 15 17 S 0.11 1.22 23.18 -107.50 -2.49 -1.27 15 18 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 19 H 0.03 0.70 7.20 -51.93 -0.37 0.32 15 20 H -0.02 -0.47 7.57 -51.93 -0.39 -0.86 15 21 H 0.34 6.45 8.72 -39.29 -0.34 6.11 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 15 24 H 0.08 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.10 1.51 8.14 -51.93 -0.42 1.08 15 26 H 0.17 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.17 1.17 8.06 -52.49 -0.42 0.74 15 LS Contribution 251.87 15.07 3.80 3.80 Total: -1.00 -31.71 251.87 -7.33 -39.03 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.24 Total: 0.21 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.63 Total: -10.25 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.10 Total: -48.59 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.71 -7.33 -39.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728805.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.159 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds