Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47001 * 270.00489 * 3 2 1 5 5 H 1.48502 * 109.46925 * 30.00785 * 3 2 1 6 6 H 1.48500 * 109.46967 * 150.00333 * 3 2 1 7 7 C 1.37883 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99918 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99767 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.46894 * 111.00194 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47331 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47298 * 180.02562 * 12 11 10 14 14 N 1.29027 * 124.91534 * 90.30653 * 13 12 11 15 15 C 1.31784 * 117.12400 * 180.22644 * 14 13 12 16 16 C 1.33641 * 114.49781 * 359.48088 * 15 14 13 17 17 S 1.70983 * 124.91700 * 269.99604 * 13 12 11 18 18 H 0.97008 * 119.99502 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47214 * 59.99948 * 9 7 2 20 20 H 1.09004 * 109.47221 * 299.99797 * 9 7 2 21 21 H 1.00904 * 110.99371 * 56.04611 * 10 9 7 22 22 H 1.08999 * 109.47494 * 60.00312 * 11 10 9 23 23 H 1.08998 * 109.47145 * 299.99951 * 11 10 9 24 24 H 1.09003 * 109.47062 * 59.99568 * 12 11 10 25 25 H 1.09006 * 109.46638 * 300.00206 * 12 11 10 26 26 H 1.08002 * 122.75368 * 179.75456 * 15 14 13 27 27 H 1.08001 * 126.03830 * 180.26907 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 4.0011 -2.5792 -0.0010 11 6 5.4695 -2.6185 -0.0022 12 6 5.9408 -4.0741 -0.0027 13 6 7.4472 -4.1143 -0.0032 14 7 8.1857 -4.1400 1.0545 15 6 9.4910 -4.1692 0.8754 16 6 9.8746 -4.1792 -0.4047 17 16 8.4250 -4.1403 -1.4056 18 1 -0.4850 0.8402 0.0004 19 1 3.8752 -0.6806 0.8888 20 1 3.8745 -0.6802 -0.8912 21 1 3.6252 -3.0956 -0.7822 22 1 5.8472 -2.1143 0.8873 23 1 5.8457 -2.1149 -0.8926 24 1 5.5631 -4.5780 -0.8924 25 1 5.5645 -4.5781 0.8876 26 1 10.1931 -4.1882 1.6958 27 1 10.8932 -4.2064 -0.7626 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591728805.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = 16.551284 kcal Electronic energy + Delta-G solvation = -11269.411563 eV Core-core repulsion = 9152.903037 eV Total energy + Delta-G solvation = -2116.508526 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.61964 -37.61659 -34.91811 -33.27789 -30.40976 -28.48889 -25.59068 -23.43328 -22.96088 -20.82759 -19.02487 -18.86122 -16.92296 -16.64371 -16.19568 -15.77758 -15.36158 -14.95421 -14.59886 -14.16528 -13.97880 -13.75364 -12.97032 -12.70338 -12.41809 -12.28732 -12.10869 -11.82213 -11.50140 -10.82441 -10.60079 -10.36538 -9.82002 -9.21937 -8.30848 -6.35527 -0.25595 0.42735 0.81745 1.34037 1.36793 1.47859 1.87603 2.33560 3.02744 3.08056 3.65864 4.02841 4.10815 4.31655 4.40634 4.54796 4.57657 4.74647 4.92369 5.00281 5.07572 5.24834 5.50870 5.90431 6.52050 6.63384 6.75175 6.81099 7.29438 8.85747 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.062547 B = 0.005519 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.558874 B = 5071.920579 C = 5199.642471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.530 4.530 8 H 0.041 0.959 9 C 0.174 3.826 10 N -0.688 5.688 11 C 0.071 3.929 12 C -0.036 4.036 13 C 0.037 3.963 14 N -0.507 5.507 15 C 0.017 3.983 16 C -0.252 4.252 17 S 0.142 5.858 18 H 0.268 0.732 19 H 0.022 0.978 20 H -0.010 1.010 21 H 0.343 0.657 22 H 0.057 0.943 23 H 0.032 0.968 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.196 0.804 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.591 -7.242 -3.798 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.059 0.941 9 C 0.045 3.955 10 N -0.319 5.319 11 C -0.060 4.060 12 C -0.077 4.077 13 C -0.240 4.240 14 N -0.222 5.222 15 C -0.133 4.133 16 C -0.391 4.391 17 S 0.395 5.605 18 H 0.077 0.923 19 H 0.040 0.960 20 H 0.007 0.993 21 H 0.161 0.839 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.213 0.787 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 20.945 -7.205 -3.661 22.450 hybrid contribution 0.587 0.967 0.026 1.132 sum 21.532 -6.238 -3.635 22.710 Atomic orbital electron populations 1.70050 1.08116 1.28265 1.52179 1.25872 0.95657 1.03276 0.94114 0.85668 0.79243 0.78448 0.79280 1.18829 1.20545 1.17750 1.21333 0.91235 0.93621 1.50598 0.94101 1.19761 0.93858 0.87001 0.94835 1.60324 1.06391 1.14993 1.50195 1.21833 0.88392 0.95563 1.00195 1.20149 0.84833 0.97303 1.05382 1.27064 1.01633 1.03528 0.91799 1.66300 1.06336 1.16759 1.32839 1.22236 0.90672 1.02550 0.97832 1.27506 1.04293 1.11443 0.95890 1.83938 0.97859 1.66809 1.11851 0.92286 0.96009 0.99263 0.83939 0.92424 0.95000 0.87821 0.88869 0.78705 0.77362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.42 13.96 21.45 0.30 -59.12 15 2 C 0.01 0.50 5.47 84.66 0.46 0.97 15 3 Si 0.95 44.42 27.47 68.60 1.88 46.30 15 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 15 7 C -0.53 -31.03 9.87 25.60 0.25 -30.77 15 8 H 0.04 2.63 8.06 -2.91 -0.02 2.61 15 9 C 0.17 8.45 4.51 85.56 0.39 8.83 15 10 N -0.69 -28.09 6.49 -517.94 -3.36 -31.46 15 11 C 0.07 2.34 5.67 86.31 0.49 2.83 15 12 C -0.04 -0.95 6.06 29.85 0.18 -0.77 15 13 C 0.04 0.95 6.64 88.52 0.59 1.54 15 14 N -0.51 -13.90 10.54 -191.45 -2.02 -15.92 15 15 C 0.02 0.35 11.35 83.66 0.95 1.30 15 16 C -0.25 -4.10 11.37 66.78 0.76 -3.34 15 17 S 0.14 2.73 23.18 -56.49 -1.31 1.42 15 18 H 0.27 15.64 8.31 -92.70 -0.77 14.87 15 19 H 0.02 1.08 7.20 -2.39 -0.02 1.07 15 20 H -0.01 -0.48 7.57 -2.39 -0.02 -0.50 15 21 H 0.34 13.13 8.72 -89.69 -0.78 12.34 15 22 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 23 H 0.03 0.99 8.14 -2.39 -0.02 0.97 15 24 H 0.10 2.31 8.14 -2.39 -0.02 2.29 15 25 H 0.09 2.68 8.14 -2.38 -0.02 2.66 15 26 H 0.20 2.85 8.06 -2.91 -0.02 2.83 15 27 H 0.21 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -68.74 251.87 -0.11 -68.85 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.33 Total: 9.35 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 4.07 Total: -19.42 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.08 Total: -106.50 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -68.74 -0.11 -68.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591728805.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.400 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds