Wall clock time and date at job start Sun Mar 29 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99976 * 2 1 4 4 H 1.48501 * 109.47068 * 270.00046 * 3 2 1 5 5 H 1.48502 * 109.46938 * 29.99998 * 3 2 1 6 6 H 1.48503 * 109.46891 * 149.99690 * 3 2 1 7 7 C 1.37874 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99678 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47222 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00200 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47089 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 180.02562 * 12 11 10 14 14 C 1.33635 * 122.75319 * 124.73253 * 13 12 11 15 15 S 1.76192 * 107.92524 * 179.97438 * 14 13 12 16 16 C 1.70976 * 90.28427 * 0.27803 * 15 14 13 17 17 N 1.29027 * 110.16712 * 359.83656 * 16 15 14 18 18 H 0.96995 * 119.99783 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47489 * 59.99953 * 9 7 2 20 20 H 1.09002 * 109.46825 * 299.99797 * 9 7 2 21 21 H 1.00898 * 110.99645 * 56.04309 * 10 9 7 22 22 H 1.09002 * 109.47038 * 60.00062 * 11 10 9 23 23 H 1.08998 * 109.46986 * 299.99929 * 11 10 9 24 24 H 1.08997 * 109.47344 * 59.99903 * 12 11 10 25 25 H 1.08998 * 109.47310 * 299.99929 * 12 11 10 26 26 H 1.08001 * 126.03202 * 0.03585 * 14 13 12 27 27 H 1.08001 * 124.91761 * 179.84059 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0024 12 6 2.5303 -6.0429 0.0031 13 6 1.8119 -7.3678 0.0031 14 6 2.0305 -8.3088 -0.9202 15 16 0.9931 -9.6838 -0.5493 16 6 0.3626 -8.8534 0.8057 17 7 0.9119 -7.6906 0.9101 18 1 -0.4849 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6241 -2.5566 0.8903 21 1 2.8399 -3.5482 0.7836 22 1 0.8809 -4.9821 -0.8878 23 1 0.8801 -4.9808 0.8922 24 1 3.1552 -5.9680 0.8930 25 1 3.1552 -5.9690 -0.8869 26 1 2.7217 -8.2390 -1.7471 27 1 -0.3870 -9.2455 1.4772 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591754409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:58 Heat of formation + Delta-G solvation = 12.855536 kcal Electronic energy + Delta-G solvation = -11257.133558 eV Core-core repulsion = 9140.464772 eV Total energy + Delta-G solvation = -2116.668786 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.83122 -37.38654 -34.86505 -32.94827 -30.22460 -27.93745 -25.86819 -24.04302 -23.03435 -20.49764 -18.93629 -18.45217 -16.95080 -16.74756 -16.15437 -15.89739 -15.20097 -14.74270 -14.28052 -14.05842 -13.94688 -13.65339 -12.86111 -12.76542 -12.57217 -12.33838 -12.04541 -11.90578 -11.30745 -10.67843 -10.57031 -10.39565 -9.71058 -9.19236 -8.23685 -6.36004 -0.18140 0.53264 0.80024 1.41340 1.44065 1.55422 1.82878 2.39938 3.09361 3.32425 3.58272 4.13206 4.19541 4.31285 4.46908 4.60439 4.66494 4.95886 5.05051 5.09523 5.18949 5.30434 5.59752 5.98564 6.38848 6.68123 6.82974 6.86790 7.35202 8.88447 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.096966 B = 0.004722 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 288.691363 B = 5928.129647 C = 6065.053065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.207 3.793 10 N -0.686 5.686 11 C 0.075 3.925 12 C -0.031 4.031 13 C 0.046 3.954 14 C -0.256 4.256 15 S 0.163 5.837 16 C 0.013 3.987 17 N -0.509 5.509 18 H 0.266 0.734 19 H -0.003 1.003 20 H -0.043 1.043 21 H 0.337 0.663 22 H 0.048 0.952 23 H 0.011 0.989 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.199 0.801 27 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -19.656 -0.815 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.079 3.921 10 N -0.316 5.316 11 C -0.056 4.056 12 C -0.071 4.071 13 C -0.086 4.086 14 C -0.395 4.395 15 S 0.416 5.584 16 C -0.285 4.285 17 N -0.224 5.224 18 H 0.074 0.926 19 H 0.016 0.984 20 H -0.025 1.025 21 H 0.154 0.846 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.099 0.901 25 H 0.118 0.882 26 H 0.216 0.784 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.114 -20.197 -1.486 20.489 hybrid contribution -0.114 1.698 0.997 1.972 sum 2.999 -18.499 -0.488 18.747 Atomic orbital electron populations 1.70111 1.07999 1.28114 1.51451 1.26048 0.95843 1.03699 0.94438 0.85244 0.78475 0.77473 0.78548 1.19683 1.20672 1.18485 1.21556 0.93968 0.91199 1.50776 0.91316 1.19211 0.90710 0.89157 0.92989 1.60577 1.20495 1.01386 1.49170 1.21706 0.95751 0.89244 0.98852 1.20057 0.96089 0.86767 1.04183 1.20384 0.97202 0.98505 0.92506 1.27206 1.08554 0.97247 1.06536 1.83676 1.32928 1.18157 1.23679 1.28939 1.04353 0.92871 1.02310 1.66123 1.10496 1.17806 1.27954 0.92557 0.98440 1.02528 0.84578 0.93349 0.97078 0.90145 0.88180 0.78416 0.75852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.29 21.45 0.28 -58.08 15 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 15 3 Si 0.98 45.07 29.54 68.60 2.03 47.10 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.54 -31.68 9.32 25.60 0.24 -31.44 15 8 H 0.07 3.88 7.81 -2.91 -0.02 3.86 15 9 C 0.21 11.80 5.44 85.56 0.47 12.26 15 10 N -0.69 -31.36 6.49 -517.94 -3.36 -34.72 15 11 C 0.07 2.94 5.58 86.30 0.48 3.43 15 12 C -0.03 -0.92 5.97 29.85 0.18 -0.74 15 13 C 0.05 1.26 6.08 41.52 0.25 1.52 15 14 C -0.26 -5.41 11.07 66.77 0.74 -4.67 15 15 S 0.16 2.66 23.22 -56.49 -1.31 1.35 15 16 C 0.01 0.26 12.23 130.65 1.60 1.86 15 17 N -0.51 -14.78 10.34 -191.54 -1.98 -16.77 15 18 H 0.27 15.44 8.31 -92.71 -0.77 14.66 15 19 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 20 H -0.04 -2.65 8.14 -2.39 -0.02 -2.67 15 21 H 0.34 14.41 8.72 -89.70 -0.78 13.63 15 22 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.01 0.47 8.08 -2.39 -0.02 0.45 15 24 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 25 H 0.10 2.67 8.03 -2.39 -0.02 2.65 15 26 H 0.20 3.15 8.06 -2.91 -0.02 3.12 15 27 H 0.23 2.92 8.06 -2.91 -0.02 2.90 15 Total: -1.00 -70.26 254.98 0.45 -69.81 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.38 Total: 8.78 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.42 Total: -17.46 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -5.06 Total: -109.57 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.31 Total: 1.35 kcal Total: -70.26 0.45 -69.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591754409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.665 kcal (2) G-P(sol) polarization free energy of solvation -70.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds