Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 S 1.81398 * 109.47215 * 270.27410 * 7 6 5 9 9 C 1.81405 * 103.00229 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47065 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00060 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99778 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00075 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00028 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47112 * 89.99897 * 14 12 10 16 16 H 1.48501 * 109.47122 * 209.99737 * 14 12 10 17 17 H 1.48497 * 109.47118 * 329.99906 * 14 12 10 18 18 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 19 19 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 20 20 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 21 21 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 22 22 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 23 23 H 1.08994 * 109.47481 * 30.27445 * 7 6 5 24 24 H 1.09006 * 109.46847 * 150.28064 * 7 6 5 25 25 H 1.09003 * 109.46813 * 300.00105 * 9 8 7 26 26 H 1.09000 * 109.47135 * 59.99507 * 9 8 7 27 27 H 0.96995 * 120.00330 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 16 1.6161 -3.0963 -1.7093 9 6 1.0598 -4.8108 -1.5046 10 6 0.8576 -5.4385 -2.8597 11 1 1.0454 -4.8637 -3.7545 12 6 0.4328 -6.7466 -2.9570 13 7 0.2046 -7.4467 -1.8673 14 14 0.1829 -7.5249 -4.6366 15 1 1.4482 -8.1637 -5.0795 16 1 -0.8868 -8.5515 -4.5522 17 1 -0.2116 -6.4782 -5.6134 18 1 -0.3634 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3633 0.8902 0.5135 21 1 1.9613 2.1345 -0.0004 22 1 4.4369 1.2611 0.0003 23 1 2.5363 -3.1404 0.5150 24 1 0.8430 -2.5918 0.5143 25 1 1.8126 -5.3736 -0.9526 26 1 0.1195 -4.8244 -0.9535 27 1 -0.0938 -8.3671 -1.9358 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593422234.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = 52.187414 kcal Electronic energy + Delta-G solvation = -11387.473849 eV Core-core repulsion = 9272.510622 eV Total energy + Delta-G solvation = -2114.963228 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.89764 -33.89142 -33.15991 -31.56317 -28.56583 -27.29081 -26.40547 -23.06585 -21.24240 -19.77651 -17.07276 -16.43094 -15.91680 -15.11916 -14.62270 -14.39196 -13.80184 -13.15954 -12.91523 -12.88041 -12.59289 -12.47027 -12.23612 -11.90741 -10.88330 -10.74589 -10.15694 -9.78654 -9.61822 -9.45684 -8.91374 -8.62438 -8.14705 -6.72367 -6.20619 -4.24840 1.87169 2.67643 2.90367 3.26234 3.31819 3.36615 3.54080 3.80007 4.34979 4.59007 4.73452 4.88459 5.11105 5.16649 5.30244 5.44154 5.53006 5.79588 5.91800 6.39797 6.88356 7.05409 7.09817 7.25909 7.74013 7.99326 8.28264 8.76942 9.38267 10.90649 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.067259 B = 0.006162 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.204065 B = 4542.931212 C = 4594.132197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.453 5.453 3 C -0.064 4.064 4 C -0.029 4.029 5 N -0.481 5.481 6 C 0.236 3.764 7 C -0.013 4.013 8 S -0.281 6.281 9 C 0.088 3.912 10 C -0.512 4.512 11 H 0.067 0.933 12 C 0.066 3.934 13 N -0.893 5.893 14 Si 0.907 3.093 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.271 1.271 18 H 0.083 0.917 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.172 0.828 22 H 0.168 0.832 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.039 0.961 26 H 0.036 0.964 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 13.810 5.059 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.136 5.136 3 C -0.198 4.198 4 C -0.178 4.178 5 N -0.200 5.200 6 C -0.026 4.026 7 C -0.162 4.162 8 S -0.055 6.055 9 C -0.059 4.059 10 C -0.551 4.551 11 H 0.085 0.915 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.734 3.266 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.196 1.196 18 H 0.101 0.899 19 H 0.106 0.894 20 H 0.101 0.899 21 H 0.190 0.810 22 H 0.186 0.814 23 H 0.122 0.878 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.147 13.679 4.212 14.313 hybrid contribution -1.120 -0.519 0.310 1.273 sum -1.267 13.160 4.522 13.973 Atomic orbital electron populations 1.22068 0.76583 1.04220 1.04257 1.45239 1.07676 1.06456 1.54251 1.22624 0.91442 0.92335 1.13409 1.22287 0.96318 0.91258 1.07950 1.70261 1.18315 1.11803 1.19671 1.22404 0.85719 0.89644 1.04845 1.21475 1.03729 0.90018 1.01003 1.86954 1.89867 1.21830 1.06859 1.21114 0.98497 0.84905 1.01389 1.20653 1.46442 0.96980 0.91041 0.91461 1.24957 0.94837 0.96550 0.97470 1.69949 1.45487 1.09902 1.27757 0.86342 0.78039 0.78968 0.83259 1.20281 1.20984 1.19575 0.89890 0.89394 0.89887 0.81037 0.81436 0.87794 0.89598 0.94314 0.94567 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.97 59.85 0.66 1.39 15 2 N -0.45 -6.40 3.15 -121.27 -0.38 -6.78 15 3 C -0.06 -0.81 11.58 -16.56 -0.19 -1.01 15 4 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 15 5 N -0.48 -8.88 11.25 -10.81 -0.12 -9.00 15 6 C 0.24 4.11 7.16 -155.42 -1.11 2.99 15 7 C -0.01 -0.23 6.25 36.01 0.22 -0.01 15 8 S -0.28 -6.24 21.64 -107.50 -2.33 -8.57 15 9 C 0.09 2.27 5.70 36.00 0.21 2.47 15 10 C -0.51 -14.42 9.13 -34.44 -0.31 -14.74 15 11 H 0.07 1.91 7.71 -52.49 -0.40 1.50 15 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 13 N -0.89 -25.80 13.29 55.43 0.74 -25.06 15 14 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 15 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 18 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 19 H 0.09 0.87 7.05 -51.93 -0.37 0.50 15 20 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.17 1.47 8.06 -52.49 -0.42 1.05 15 22 H 0.17 1.93 8.06 -52.49 -0.42 1.51 15 23 H 0.10 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.09 1.34 7.07 -51.92 -0.37 0.98 15 25 H 0.04 1.04 8.14 -51.92 -0.42 0.62 15 26 H 0.04 0.95 8.14 -51.92 -0.42 0.52 15 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 255.26 15.07 3.85 3.85 Total: -1.00 -32.19 255.26 -7.34 -39.53 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -3.23 Total: -2.50 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -0.84 Total: -7.80 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.23 Total: -40.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -2.33 Total: -8.57 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.19 -7.34 -39.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593422234.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.717 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds